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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTCTCCTACTTCATCCTTGAGGACTTTATCTTCTACTGGGGCCACCGAGTTCTTCACACCAAGTGGCTGTACAAGCATGTCCACTGTGTTCATCATGAgtaagtttgctcctccggtttttgacttaccatctcttttcctgttcttgatag

Basic information

species Selaginella moellendorffii
transcript EFJ22305
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ22305 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: GLYMA01G04170.3 (Glycine max), 5'ss of exon 4
TCCTCTCCTACTTCATCCTTGAGGACTTTATCTTCTACTGGGGCCACCGAGTTCTTCACACCAAGTGGCTGTACAAGCATGTCCACTGTGTTCATCATGAgtaagtttgctcctccggtttttgactt--accatctcttttcctgttcttgatag------------------------------
|  |||  ||||||||  | ||||||||||| ||||||||||| ||  || | || ||||| |||||| | ||||||||||| ||| |||||||||||||||||||||  |  |  |   |  || ||   |  |   | |   | || |  ||||                              
TAATCTTTTACTTCATTTTGGAGGACTTTATATTCTACTGGGGACATAGAATACTGCACACAAAGTGGTTATACAAGCATGTGCACAGTGTTCATCATGAgtaagtttatttgtgtgtaatgggattttagcttttattatatttattatctatagactactatagggttttgcaatattgtgaag

upper sequence: EFJ22305 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: GLYMA02G03540.1 (Glycine max), 5'ss of exon 4
TCCTCTCCTACTTCATCCTTGAGGACTTTATCTTCTACTGGGGCCACCGAGTTCTTCACACCAAGTGGCTGTACAAGCATGTCCACTGTGTTCATCATGAgtaagtttgctcctccggtttttgactt--accatctcttttcctgttcttgatag------------------------------
|  |||  ||||||||  | ||||||||||| ||||||||||| ||  || | || ||||| || ||||| ||||||||||| ||| ||||||||||||||||||||   |  |  | | |  || ||   |  |   | |   | || |  ||||                              
TAATCTTTTACTTCATTTTGGAGGACTTTATATTCTACTGGGGACATAGAATACTGCACACAAAATGGCTATACAAGCATGTGCACAGTGTTCATCATGAgtaagttcatttgtgtgctatgggattttagcttttattatgtttattatcaatagactactatagggttttgcaatattgtcaag

upper sequence: EFJ22305 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: Vv06s0004g05470.t01 (Vitis vinifera), 5'ss of exon 4
TCCTCTCCTACTTCATCCTTGAGGACTTTATCTTCTACTGGGGCCACCGAGTTCTTCACACCAAGTGGCTGTACAAGCATGTCCACTGTGTTCATCATGAgtaagtttgctcctccggtttttgacttaccatctcttttcctgttcttgatag----------------------------------------
|  | | |||||||||||||||||| ||| | ||||| ||||| ||  ||||| | || || || ||| ||||||||||||| |||||||||||||| ||||||||  |    |  ||| ||| | ||  ||    | ||  | ||   ||| |                                        
TAATATTCTACTTCATCCTTGAGGATTTTGTTTTCTATTGGGGACATAGAGTTTTACATACAAAATGGTTGTACAAGCATGTGCACTGTGTTCATCACGAgtaagtgagagtataaggtgttttatttttcaagaatgttatt-tttgagatggcttttggatgcttttataagcatgtttattaaatgtacag

upper sequence: EFJ22305 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: PP1S130_70V6.1 (Physcomitrella patens), 5'ss of exon 4
TCCTCTCCTACTTCATCCTTGAGGACTTTATCTTCTACTGGGGCCACCGAGTTCTTCACACCAAGTGGCTGTACAAGCATGTCCACTGTGTTCATCATGAgtaagtttgctcctc-cggtttttgacttaccatctcttttcctgttcttgatag---------------------------------------------
| || || || || ||| | || || || ||||| || ||||| |||||  |||| |||||||||||||| |||||||| || ||| | |||||||||||||  ||   |||  | | |  || || ||   || ||    |  ||  |||   |                                             
TACTATCTTATTTTATCTTAGAAGATTTCATCTTTTATTGGGGGCACCGTATTCTGCACACCAAGTGGCTCTACAAGCACGTGCACAGCGTTCATCATGAgtgtgtgctctctactctgaattcgaattcgaatttcaaagctagtagttgtctggtgtcctacatgtgttctaattattcacctgcccttcgttatcag

upper sequence: EFJ22305 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: PP1S31_31V6.1 (Physcomitrella patens), 5'ss of exon 4
TCCTCTCCTACTTCATCCTTGAGGACTTTATCTTCTACTGGGGCCACCGAGTTCTTCACACCAAGTGGCTGTACAAGCATGTCCACTGTGTTCATCATGAgtaagtttgctcctccg-gtttttgacttaccatctcttttcctgttcttgatag---------------------------------------------
|| | |||||||||||  | || || || |||||||||||||| |||||  |||| ||||| |||||||| |||||| |||| ||| | || ||||| ||||  ||   |||||||  |    ||  |    ||||  ||   |||  || | |                                              
TCTTGTCCTACTTCATATTGGAAGATTTCATCTTCTACTGGGGTCACCGTCTTCTGCACACTAAGTGGCTCTACAAGAATGTTCACAGCGTCCATCACGAgtgtgtgctctcctccctgaacctggatgcaaatcttgttatatgtctttcagaattagtgcttgttggatgttctacaggtggtctattttatacatgc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169042596|gb|FE453729.1|FE453729
EST:     GTTCTTCACACCAAGTGGCTGTACAAGCATGTCCACTGTGTTCATCATGA                         ATATGCTACTCCATTCGGTCTCACGTCGGAGTACGCTCATCCCGCAGAGAT
genomic: GTTCTTCACACCAAGTGGCTGTACAAGCATGTCCACTGTGTTCATCATGAgtaagtttgc ... ttcttgatagATATGCTACTCCATTCGGTCTCACGTCGGAGTACGCTCATCCCGCAGAGAT