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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgctcctccggtttttgacttaccatctcttttcctgttcttgatagATATGCTACTCCATTCGGTCTCACGTCGGAGTACGCTCATCCCGCAGAGATCCTGTTCCTGGGCTTTGCAACGATTTTCGGACCAGCTATAACAGGCCCT

Basic information

species Selaginella moellendorffii
transcript EFJ22305
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169042596|gb|FE453729.1|FE453729
EST:     GTTCTTCACACCAAGTGGCTGTACAAGCATGTCCACTGTGTTCATCATGA                         ATATGCTACTCCATTCGGTCTCACGTCGGAGTACGCTCATCCCGCAGAGAT
genomic: GTTCTTCACACCAAGTGGCTGTACAAGCATGTCCACTGTGTTCATCATGAgtaagtttgc ... ttcttgatagATATGCTACTCCATTCGGTCTCACGTCGGAGTACGCTCATCCCGCAGAGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagtttgctcctccggtttttgacttaccatctcttttcctgttcttgatagATATGCTACTCCATTCGGTCTCACGTCGGAGTACGCTCATCCCGCAGAGATCCTGTTCCTGGGCTTTGCAACGATTTTCGGACCAGCTATAACAGGCCCT
                        gacttac  putative branch site (score: 2)
                          cttaccatctcttttc  CT-rich tract
                   tttttga  TA-rich tract