1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGGAGGCTATGGTGCTGGGAATCCCATGGCTCCCAATCCTGACGATCCGTATGGTGGTCCTCCTCGCGCTCCCAGTTTCTGGCAGTCCATGCTTTCCGTGgtgagtggcgacttcttctcgttttgttttgttattttttttgctacgcgtgtgatgaaagtctgtttttctcttctgcgcag
species | Selaginella moellendorffii |
transcript | EFJ22276 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATGGTGGTCCTCCTCGCGCTCCCAGTTTCTGGCAGTCCATGCTTTCCGTG CTGCATGGTGTCATGACTTTCTTTGGACGGCTGGCAATTCTGATTGACGAGEST: gi|169069972|gb|FE480393.1|FE480393
genomic: ATGGTGGTCCTCCTCGCGCTCCCAGTTTCTGGCAGTCCATGCTTTCCGTGgtgagtggcg ... ttctgcgcagCTTCATGGTGTCATGACTTTCTTTGGACGGCTGGCAATTCTGATTGACGAG
EST: ATGGTGGTCCTCCTCGCGCTCCCAGTTTTTGGCAGTCCATGCTTTCCGTG CTTCATGGTGTCATGACTTTCTTTGGACGGCTGGCAATTCTGATTGACGAGEST: gi|169020194|gb|FE428243.1|FE428243
genomic: ATGGTGGTCCTCCTCGCGCTCCCAGTTTCTGGCAGTCCATGCTTTCCGTGgtgagtggcg ... ttctgcgcagCTTCATGGTGTCATGACTTTCTTTGGACGGCTGGCAATTCTGATTGACGAG
EST: ATGGTGGTCCTCCTCGCGCTCCCAGTTTCTGGCAGTCCATGCTTTCCGTG CTGCATGGTGTCATGACTTTCTTTGGACGGCTGGCAATTCTGATTGACGAGEST: gi|169069457|gb|FE479514.1|FE479514
genomic: ATGGTGGTCCTCCTCGCGCTCCCAGTTTCTGGCAGTCCATGCTTTCCGTGgtgagtggcg ... ttctgcgcagCTTCATGGTGTCATGACTTTCTTTGGACGGCTGGCAATTCTGATTGACGAG
EST: ATGGTGGTCCTCCTCGCGCTCCCAGTTTCTGGCAGTCCATGCTTTCCGTG CTGCATGGTGTCATGACTTTCTTTGGACGGCTGGCAATTCTGATTGACGAGEST: gi|169100776|gb|FE502184.1|FE502184
genomic: ATGGTGGTCCTCCTCGCGCTCCCAGTTTCTGGCAGTCCATGCTTTCCGTGgtgagtggcg ... ttctgcgcagCTTCATGGTGTCATGACTTTCTTTGGACGGCTGGCAATTCTGATTGACGAG
EST: ATGGTGGTCCTCCTCGCGCTCCCAGTTTCTGGCAGTCCATGCTTTCCGTG CTTCATGGTGTCATGACTTTCTTTGGACGGCTGGCAATTCTGATTGACGAGEST: gi|169069973|gb|FE480394.1|FE480394
genomic: ATGGTGGTCCTCCTCGCGCTCCCAGTTTCTGGCAGTCCATGCTTTCCGTGgtgagtggcg ... ttctgcgcagCTTCATGGTGTCATGACTTTCTTTGGACGGCTGGCAATTCTGATTGACGAG
EST: ATGGTGGTCCTCCTCGCGCTCCCAGTTTCTGGCAGTCCATGCTTTCCGTG CTTCATGGTGTCATGACTTTCTTTGGACGGCTGGCAATTCTGATTGACGAGEST: gi|169109589|gb|FE510023.1|FE510023
genomic: ATGGTGGTCCTCCTCGCGCTCCCAGTTTCTGGCAGTCCATGCTTTCCGTGgtgagtggcg ... ttctgcgcagCTTCATGGTGTCATGACTTTCTTTGGACGGCTGGCAATTCTGATTGACGAG
EST: ATGGTGGTCCTCCTCGCGCTCCCAGTTTCTGGCAGTCCATGCTTTCCGTG CTGCATGGTGTCATGACTTTCTTTGGACGGCTGGCAATTCTGATTGACGAGEST: gi|169026307|gb|FE433398.1|FE433398
genomic: ATGGTGGTCCTCCTCGCGCTCCCAGTTTCTGGCAGTCCATGCTTTCCGTGgtgagtggcg ... ttctgcgcagCTTCATGGTGTCATGACTTTCTTTGGACGGCTGGCAATTCTGATTGACGAG
EST: ATGGTGGTCCTCCTCGCGCTCCCAGTTTCTGGCAGTCCATGCTTTCCGTG CTTCATGGTGTCATGACTTTCTTTGGACGGCTGGCAATTCTGATTGACGAGEST: gi|169100777|gb|FE502185.1|FE502185
genomic: ATGGTGGTCCTCCTCGCGCTCCCAGTTTCTGGCAGTCCATGCTTTCCGTGgtgagtggcg ... ttctgcgcagCTTCATGGTGTCATGACTTTCTTTGGACGGCTGGCAATTCTGATTGACGAG
EST: ATGGTGGTCCTCCTCGCGCTCCCAGTTTCTGGCAGTCCATGCTTTCCGTG CTTCATGGTGTCATGACTTTCTTTGGACGGCTGGCAATTCTGATTGACGAGEST: gi|169020193|gb|FE428242.1|FE428242
genomic: ATGGTGGTCCTCCTCGCGCTCCCAGTTTCTGGCAGTCCATGCTTTCCGTGgtgagtggcg ... ttctgcgcagCTTCATGGTGTCATGACTTTCTTTGGACGGCTGGCAATTCTGATTGACGAG
EST: ATGGTGGTCCTCCTCGCGCTCCCAGTTTCTGGCAGTCCATGCTTTCCGTG CTGCATGGTGTCATGACTTTCTTTGGACGGCTGGCAATTCTGATTGACGAGEST: gi|169069456|gb|FE479513.1|FE479513
genomic: ATGGTGGTCCTCCTCGCGCTCCCAGTTTCTGGCAGTCCATGCTTTCCGTGgtgagtggcg ... ttctgcgcagCTTCATGGTGTCATGACTTTCTTTGGACGGCTGGCAATTCTGATTGACGAG
EST: ATGGTGGTCCTCCTCGCGCTCCCAGTTTTTGGCAGTCCATGCTTTCCGTG CTGCATGGTGTCATGACTTTCTTTGGACGGCTGGCAATTTTGATTGACGAG
genomic: ATGGTGGTCCTCCTCGCGCTCCCAGTTTCTGGCAGTCCATGCTTTCCGTGgtgagtggcg ... ttctgcgcagCTTCATGGTGTCATGACTTTCTTTGGACGGCTGGCAATTCTGATTGACGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAGGCTATGGTGCTGGGAATCCCATGGCTCCCAATCCTGACGATCCGTATGGTGGTCCTCCTCGCGCTCCCAGTTTCTGGCAGTCCATGCTTTCCGTGgtgagtggcgacttcttctcgttttgttttgttattttttttgctacgcgtgtgatgaaagtctgtttttctcttctgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC