Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCACCGCCGCCACAACGATCGACAAGCAAAATCTCGCCCAGCAGCCTTCCACCGCCGTTGGGGCCGCTGTGCCTTTGAGACCCTGGGAACGCAACCAAGgtaagtttgtttgattctttctttcttccagtacagcgtacttccatccttacatcctcgccaattgtgtgtgttcttgcattccag

Basic information

species Selaginella moellendorffii
transcript EFJ22276
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169059568|gb|FE468802.1|FE468802
EST:     CACCGCCGTTGGGGCCGCTGTGCCTTTGAGACCCTGGGAACGCAACCAAG                         GAGGCTATGGGAGCTATGGAACGATGAGCACGTACAACAGACCATACAACT
genomic: CACCGCCGTTGGGGCCGCTGTGCCTTTGAGACCCTGGGAACGCAACCAAGgtaagtttgt ... tgcattccagGAGGCTATGGGAGCTATGGAACGATGAGCACGTACAACAGACCATACAACT
EST: gi|169020194|gb|FE428243.1|FE428243
EST:     CACCGCCGTTGGGGCCGCTGTGCCTTTGAGACCCTGGGAACGCAACCAAG                         GAGGCTATGGGAGCTATGGAACGATGAGCACGTACAACAGACCATACAACT
genomic: CACCGCCGTTGGGGCCGCTGTGCCTTTGAGACCCTGGGAACGCAACCAAGgtaagtttgt ... tgcattccagGAGGCTATGGGAGCTATGGAACGATGAGCACGTACAACAGACCATACAACT
EST: gi|169069457|gb|FE479514.1|FE479514
EST:     CACCGCCGTTGGGGCCGCTGTGCCTTTGAGACCCTGGGAACGCAACCAAG                         GAGGCTATGGGAGCTATGGAACGATGAGCACGTACAACAGACCATACAACT
genomic: CACCGCCGTTGGGGCCGCTGTGCCTTTGAGACCCTGGGAACGCAACCAAGgtaagtttgt ... tgcattccagGAGGCTATGGGAGCTATGGAACGATGAGCACGTACAACAGACCATACAACT
EST: gi|169100776|gb|FE502184.1|FE502184
EST:     GCCTTTGAGA-CCTGGGGAACGCAACCAAG                         GAGGCTATGGGAGCTATGGAACGATGAGCACGTACAACAGACCATACAACT
genomic: GCCTTTGAGACCCT-GGGAACGCAACCAAGgtaagtttgt ... tgcattccagGAGGCTATGGGAGCTATGGAACGATGAGCACGTACAACAGACCATACAACT
EST: gi|169069973|gb|FE480394.1|FE480394
EST:     CACCGCCGTTGGGGCCGCTGTGCCTTTGAGACCCTGGGAACGCAACCAAG                         GAGGCTATGGGAGCTATGGAACGATGAGCACGTACAACAGACCATACAACT
genomic: CACCGCCGTTGGGGCCGCTGTGCCTTTGAGACCCTGGGAACGCAACCAAGgtaagtttgt ... tgcattccagGAGGCTATGGGAGCTATGGAACGATGAGCACGTACAACAGACCATACAACT
EST: gi|169109589|gb|FE510023.1|FE510023
EST:     CACCGCCGTTGGGGCCGCTGTGCCTTTGAGACCCTGGGAACGCAACCAAG                         GAGGCTATGGGAGCTATGGAACGATGAGCACGTACAACAGACCATACAACT
genomic: CACCGCCGTTGGGGCCGCTGTGCCTTTGAGACCCTGGGAACGCAACCAAGgtaagtttgt ... tgcattccagGAGGCTATGGGAGCTATGGAACGATGAGCACGTACAACAGACCATACAACT
EST: gi|169026307|gb|FE433398.1|FE433398
EST:     CACCGCCGTTGGGGCCGCTGTGCCTTTGAGACCCTGGGAACGCAACCAAG                         GAGGCTATGGGAGCTATGGAACGATGAGCACGTACAACAGACCATACAACT
genomic: CACCGCCGTTGGGGCCGCTGTGCCTTTGAGACCCTGGGAACGCAACCAAGgtaagtttgt ... tgcattccagGAGGCTATGGGAGCTATGGAACGATGAGCACGTACAACAGACCATACAACT
EST: gi|169100777|gb|FE502185.1|FE502185
EST:     CACCGCCGTTGGGGCCGCTGTGCCTTTGAGACCCTGGGAACGCAACCAAG                         GAGGCTATGGGAGCTATGGAACGATGAGCACGTACAACAGACCATACAACT
genomic: CACCGCCGTTGGGGCCGCTGTGCCTTTGAGACCCTGGGAACGCAACCAAGgtaagtttgt ... tgcattccagGAGGCTATGGGAGCTATGGAACGATGAGCACGTACAACAGACCATACAACT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 63

GGCACCGCCGCCACAACGATCGACAAGCAAAATCTCGCCCAGCAGCCTTCCACCGCCGTTGGGGCCGCTGTGCCTTTGAGACCCTGGGAACGCAACCAAGgtaagtttgt ... tgcattccagGAGGCTATGGGAGCTATGGAACGATGAGCACGTACAACAGACCATACAACTCGGTCGGTGGCTACGGTGGTGGTGCTTACAATGGTGGTGGCTATGGATA




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