1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTACGGCCACAACCTGAATGTGTTCCGCCTGACTCCGACAGCAGATGCAAAGGCCTCGCACGTGCACCTTTACAAGCTCTGTAGAGGCGTTACAAATGCGgtaaggttctacctttactgaaacgaagcatttttcttacgagcggcatctcag
species | Selaginella moellendorffii |
transcript | EFJ22256 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGGCCTCGCACGTGCACCTTTACAAGCTCTGTAGAGGCGTTACAAATGCG GTTATCCAAGACATCAGTTTCAGCCACGACAGTCATTGGATTTCGGTAAGCEST: gi|169075345|gb|FE483603.1|FE483603
genomic: AGGCCTCGCACGTGCACCTTTACAAGCTCTGTAGAGGCGTTACAAATGCGgtaaggttct ... ggcatctcagGTTATCCAAGACATCAGTTTCAGCCACGACAGTCATTGGATTTCGGTAAGC
EST: AGGCCTCGCACGTGCACCTTTACAAGCTCTGTAGAGGCGTTACAAATGCG GTTATCCAAGACATCAGTTTCAGCCACGACAGTCATTGGATTTCGGTAAGCEST: gi|169018566|gb|FE428103.1|FE428103
genomic: AGGCCTCGCACGTGCACCTTTACAAGCTCTGTAGAGGCGTTACAAATGCGgtaaggttct ... ggcatctcagGTTATCCAAGACATCAGTTTCAGCCACGACAGTCATTGGATTTCGGTAAGC
EST: AGGCCTCGCACGTGCACCTTTACAAGCTCTGTAGAGGCGTTACAAATGCG GTTATCCAAGACATCAGTTTCAGCCACGACAGTCATTGGATTTCGGTAAGCEST: gi|169021763|gb|FE429903.1|FE429903
genomic: AGGCCTCGCACGTGCACCTTTACAAGCTCTGTAGAGGCGTTACAAATGCGgtaaggttct ... ggcatctcagGTTATCCAAGACATCAGTTTCAGCCACGACAGTCATTGGATTTCGGTAAGC
EST: AGGCCTCGCACGTGCACCTTTACAAGCTCTGTAGAGGCGTTACAAATGCG GTTATCCAAGACATCAGTTTCAGCCACGACAGTCATTGGATTTCGGTAAGCEST: gi|169082263|gb|FE486498.1|FE486498
genomic: AGGCCTCGCACGTGCACCTTTACAAGCTCTGTAGAGGCGTTACAAATGCGgtaaggttct ... ggcatctcagGTTATCCAAGACATCAGTTTCAGCCACGACAGTCATTGGATTTCGGTAAGC
EST: AGGCCTCGCACGTGCACCTTTACAAGCTCTGTAGAGGCGTTACAAATGCG GTTATCCAAGACATCAGTTTCAGCCACGACAGTCATTGGATTTCGGTAAGCEST: gi|169035007|gb|FE445882.1|FE445882
genomic: AGGCCTCGCACGTGCACCTTTACAAGCTCTGTAGAGGCGTTACAAATGCGgtaaggttct ... ggcatctcagGTTATCCAAGACATCAGTTTCAGCCACGACAGTCATTGGATTTCGGTAAGC
EST: AGGCCTCGCACGTGCACCTTTACAAGCTCTGTAGAGGCGTTACAAATGCG GTTATCCAAGACATCAGTTTCAGCCACGACAGTCATTGGATTTCGGTAAGC
genomic: AGGCCTCGCACGTGCACCTTTACAAGCTCTGTAGAGGCGTTACAAATGCGgtaaggttct ... ggcatctcagGTTATCCAAGACATCAGTTTCAGCCACGACAGTCATTGGATTTCGGTAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACGGCCACAACCTGAATGTGTTCCGCCTGACTCCGACAGCAGATGCAAAGGCCTCGCACGTGCACCTTTACAAGCTCTGTAGAGGCGTTACAAATGCGgtaaggttctacctttactgaaacgaagcatttttcttacgagcggcatctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT