1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATTTTATATTATCAAGGTTTGCAAGGGGCTTCAAGGACGAAACATTCCTTATAATATTCTTATCGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAGgtaagatttagatattatagttttatcatatcatattaattattatttttgttcag
species | Selaginella moellendorffii |
transcript | EFJ22189 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATAATATTCTTATCGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAG TGTTATGCTGAGAAACAAGCTCGTGGTGAAGTTGATCTTGAGATTTTAGAAEST: gi|169079376|gb|FE488068.1|FE488068
genomic: ATAATATTCTTATCGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAGgtaagattta ... ttttgttcagTGTTATGCTGAGAAACAAGCTCGTGGTGAAGTTGATCTTGAGATTTTAGAA
EST: ATAATATTCTTATTGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAG TGTTATGCTGAGAAACAAGCTCGTGGTGAGGTTGATCTTGAGATTTTAGAAEST: gi|169045446|gb|FE450639.1|FE450639
genomic: ATAATATTCTTATCGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAGgtaagattta ... ttttgttcagTGTTATGCTGAGAAACAAGCTCGTGGTGAAGTTGATCTTGAGATTTTAGAA
EST: ATAATATTCTTATTGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAG TGTTATGCTGAGAAACAAGCTCGTGGTGAGGTTGATCTTGAGATTTTAGAAEST: gi|169040656|gb|FE449787.1|FE449787
genomic: ATAATATTCTTATCGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAGgtaagattta ... ttttgttcagTGTTATGCTGAGAAACAAGCTCGTGGTGAAGTTGATCTTGAGATTTTAGAA
EST: ATAATATTCTTATCGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAG TGTTATGCTGAGAAACAAGCTCGTGGTGAAGTTGATCTTGAGATTTTAGAAEST: gi|169100821|gb|FE502203.1|FE502203
genomic: ATAATATTCTTATCGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAGgtaagattta ... ttttgttcagTGTTATGCTGAGAAACAAGCTCGTGGTGAAGTTGATCTTGAGATTTTAGAA
EST: ATAATATTCTTATTGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAG TGTTATGCTGAGAAACAAGCTCGTGGTGAGGTTGATCTTGAGATTTTAGAAEST: gi|169092902|gb|FE496340.1|FE496340
genomic: ATAATATTCTTATCGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAGgtaagattta ... ttttgttcagTGTTATGCTGAGAAACAAGCTCGTGGTGAAGTTGATCTTGAGATTTTAGAA
EST: ATAATATTCTTATTGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAG TGTTATGCTGAGAAACAAGCTCGTGGTGAGGTTGATCTTGAGATTTTAGAAEST: gi|169048387|gb|FE456309.1|FE456309
genomic: ATAATATTCTTATCGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAGgtaagattta ... ttttgttcagTGTTATGCTGAGAAACAAGCTCGTGGTGAAGTTGATCTTGAGATTTTAGAA
EST: ATAATATTCTTATTGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAG TGTTATGCTGAGAAACAAGCTCGTGGTGAGGTTGATCTTGAGATTTTAGAAEST: gi|169052621|gb|FE461688.1|FE461688
genomic: ATAATATTCTTATCGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAGgtaagattta ... ttttgttcagTGTTATGCTGAGAAACAAGCTCGTGGTGAAGTTGATCTTGAGATTTTAGAA
EST: ATAATATTCTTATTGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAG TGTTATGCTGAGAAACAAGCTCGTGGTGAGGTTGATCTTGAGATTTTAGAAEST: gi|169103760|gb|FE506125.1|FE506125
genomic: ATAATATTCTTATCGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAGgtaagattta ... ttttgttcagTGTTATGCTGAGAAACAAGCTCGTGGTGAAGTTGATCTTGAGATTTTAGAA
EST: ATAATATTCTTATTGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAG TGTTATGCTGAGAAACAAGCTCGTGGTGAGGTTGATCTTGAGATTTTAGAAEST: gi|169098310|gb|FE499627.1|FE499627
genomic: ATAATATTCTTATCGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAGgtaagattta ... ttttgttcagTGTTATGCTGAGAAACAAGCTCGTGGTGAAGTTGATCTTGAGATTTTAGAA
EST: ATAATATTCTTATTGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAG TGTTATGCTGAGAAACAAGCTCGTGGTGAGGTTGATCTTGAGATTTTAGAAEST: gi|169103759|gb|FE506124.1|FE506124
genomic: ATAATATTCTTATCGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAGgtaagattta ... ttttgttcagTGTTATGCTGAGAAACAAGCTCGTGGTGAAGTTGATCTTGAGATTTTAGAA
EST: ATAATATTCTTATTGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAG TGTTATGCTGAGAAACAAGCTCGTGGTGAGGTTGATCTTGAGATTTTAGAAEST: gi|169073819|gb|FE482909.1|FE482909
genomic: ATAATATTCTTATCGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAGgtaagattta ... ttttgttcagTGTTATGCTGAGAAACAAGCTCGTGGTGAAGTTGATCTTGAGATTTTAGAA
EST: ATAATATTCTTATTGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAG TGTTATGCTGAGAAACAAGCTCGTGGTGAGGTTGATCTTGAGATTTTAGAA
genomic: ATAATATTCTTATCGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAGgtaagattta ... ttttgttcagTGTTATGCTGAGAAACAAGCTCGTGGTGAAGTTGATCTTGAGATTTTAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTTATATTATCAAGGTTTGCAAGGGGCTTCAAGGACGAAACATTCCTTATAATATTCTTATCGCTAATAAAGGATGTCAAATCTTTTTATTTCCACAGgtaagatttagatattatagttttatcatatcatattaattattatttttgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG