1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGAGGAAATGTTATTTTGCTTTGAGCAAAGTAACAATGATAAAAGTTATTATCATTCAAAAGCATATATTAGAGGTAGCCCAAATGTGGTGGTGATTAATgtaagtatttttttttctttctctttatattcttgatttttaaaattttttgttatag
species | Selaginella moellendorffii |
transcript | EFJ22189 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGGTAGCCCAAATGTGGTGGTGATTAAT GTGAGTCCAATTGAATATGGGCATATATTATTAGTCCCTCGAGTATTGGATEST: gi|169079376|gb|FE488068.1|FE488068
genomic: GAGGTAGCCCAAATGTGGTGGTGATTAATgtaagtattt ... tttgttatagGTGAGTCCAATTGAATATGGGCATATATTATTAGTCCCTCGAGTATTGGAT
EST: GAGGTAGTCCAAATGT-GTGGGTGATTAAT GTGAGTCCAATTGAATATGGGCATATATTATTAGTCCCTCGAGTGTTGGATEST: gi|169049338|gb|FE459796.1|FE459796
genomic: GAGGTAGCCCAAATGTGGT-GGTGATTAATgtaagtattt ... tttgttatagGTGAGTCCAATTGAATATGGGCATATATTATTAGTCCCTCGAGTATTGGAT
EST: ATCATTCAAAAGCATATATTAGAGGTAGTCCAAATGTGGTGGTGATTAAT GTGAGTCCAATTGAATATGGGCATATATTATTAGTCCCTCGAGTGTTGGATEST: gi|169103760|gb|FE506125.1|FE506125
genomic: ATCATTCAAAAGCATATATTAGAGGTAGCCCAAATGTGGTGGTGATTAATgtaagtattt ... tttgttatagGTGAGTCCAATTGAATATGGGCATATATTATTAGTCCCTCGAGTATTGGAT
EST: ATCATTCAAAAGCATATATTAGAGGTAGTCCAAATGTGGTGGTGATTAAT GTGAGTCCAATTGAATATGGGCATATATTATTAGTCCCTCGAGTGTTGGAT
genomic: ATCATTCAAAAGCATATATTAGAGGTAGCCCAAATGTGGTGGTGATTAATgtaagtattt ... tttgttatagGTGAGTCCAATTGAATATGGGCATATATTATTAGTCCCTCGAGTATTGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGGAAATGTTATTTTGCTTTGAGCAAAGTAACAATGATAAAAGTTATTATCATTCAAAAGCATATATTAGAGGTAGCCCAAATGTGGTGGTGATTAATgtaagtatttttttttctttctctttatattcttgatttttaaaattttttgttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG