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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggacataattagtggaaagaaattttttaatttaacttttcttacagGCTTTATCACTGGGAAGATGTGCACAGAATTTCTTGCAAGAACAACTGACAATGGACTATGTATATGAGTATATGCTACTTCTACTCCAACGCTATGCAA

Basic information

species Selaginella moellendorffii
transcript EFJ22149
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169043554|gb|FE450789.1|FE450789
EST:     GTCAATCAATTCAGGAAGCGGTAGAATGGGGAAACACTTTTCCACACAAA                         GCTTTATCACTGGGAAGATGTGCACAGAATTTCTTGCAAGAACAACTGACA
genomic: GTCAATCAATTCAGGAAGCGGTAGAATGGGGAAACACTTTTCCACACAAAgtaaggacat ... tttcttacagGCTTTATCACTGGGAAGATGTGCACAGAATTTCTTGCAAGAACAACTGACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaggacataattagtggaaagaaattttttaatttaacttttcttacagGCTTTATCACTGGGAAGATGTGCACAGAATTTCTTGCAAGAACAACTGACAATGGACTATGTATATGAGTATATGCTACTTCTACTCCAACGCTATGCAA
                                     atttaac  putative branch site (score: 3)
                                           cttttcttac  CT-rich tract
            ataattagtggaaaga  TA-rich tract