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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctggttttatctttcagtggaatgaattaatattctttttgcagGTACAAAGTTTATGTTGAAGGAATTGGCTGGTCCGTGAGTCTGAAGTATGTGATGTCTTGTGGATCAACAATGCTTCAAATCGATCCTCAGTATTTAGAA

Basic information

species Selaginella moellendorffii
transcript EFJ22149
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169043554|gb|FE450789.1|FE450789
EST:     AAAAATAATTTCAGCTCTTCTGATCTATCCAAGCAATGCTCATATAGGT-                         --ACAAAGTTTATGTTGAAGGAATTGGCTGGTCCGTGAGTCTGAAGTATGT
genomic: AAAAATAATTTCAGCTCTTCTGATCTATCCAAGCAATGCTCATATAGGTGgtgctggttt ... ctttttgcagGTACAAAGTTTATGTTGAAGGAATTGGCTGGTCCGTGAGTCTGAAGTATGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgctggttttatctttcagtggaatgaattaatattctttttgcagGTACAAAGTTTATGTTGAAGGAATTGGCTGGTCCGTGAGTCTGAAGTATGTGATGTCTTGTGGATCAACAATGCTTCAAATCGATCCTCAGTATTTAGAA
                                   aattaat  putative branch site (score: 3)
 tattcttttt  CT-rich tract
 aatgaattaatattct  TA-rich tract