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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctagaactctcgtctttgttttctctgaagcgtgactgtgtgtccagTTCTATGTTTCCAATGGCGAGCTCTCTTGCCAGATGTATCAACGCTCTTGTGACATGGGACTCGGTGTTCCATTCAACATTGCGTCCTACGCACTGTTAA

Basic information

species Selaginella moellendorffii
transcript EFJ18561
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ18561 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: LOC_Os11g29390.1 (Oryza sativa), 3'ss of exon 8
-----------------------------------------------gtaagtctagaactctcgtctttgttttctctgaagcgtgactgtgtgtccagTTCTATGTTTCCAATGGCGAGCTCTCTTGCCAGATGTATCAACGCTCTTGTGACATGGGACTCGGTGTTCCATTCAACATTGCGTCCTACGCACTGTTAA
                                                 || | |     | | |    | | ||   |  |       | |   ||||||| ||||||   |  || ||||| || |||||||||||||||||||||  ||| |||||||| |||||||||||||||||||| || ||  | ||  | |
ttctctctctctctctctccatgtgtagaattacagtaaaatgatatacaaatattttcttgtagatagtttcttgcttacaataattttcttcttccagTTTTATGTTGAGAGCGGGGAGCTATCGTGCCAGATGTATCAACGCTCTGCTGATATGGGACTTGGTGTTCCATTCAACATTGCATCATATTCTCTTCTGA

upper sequence: EFJ18561 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: LOC_Os12g26060.1 (Oryza sativa), 3'ss of exon 6
------------------------------------------gtaagtctagaactctcgtctttgttttct-----ctgaagcgtgactgtgtgtccagTTCTATGTTTCCAATGGCGAGCTCTCTTGCCAGATGTATCAACGCTCTTGTGACATGGGACTCGGTGTTCCATTCAACATTGCGTCCTACGCACTGTTAA
                                           |  |  |    |  | | || | || |||     ||| |  ||       |  |||||| ||||||   ||||| ||| | || ||||||||||| |||||||||  ||| ||||| |||||||| |||||||||||||| || ||  | ||  | |
gacatctcttagtttttcatgaaatgattttgatgctaccagatgtgcttttctcatttgactatcttatctaacttctgtaatgtactgaaatccccagTTTTATGTTGAGAATGGGGAGTTGTCATGCCAGATGTACCAACGCTCTGCTGATATGGGGCTCGGTGTGCCATTCAACATTGCATCATATTCTCTTCTGA

upper sequence: EFJ18561 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: GRMZM2G005990_T01 (Zea mays), 3'ss of exon 8
------------------------------------------------------------------------------------------------------------------------gtaagtctagaactctcgtc--tttgttttctctgaagcgtgactgtgtg---tccagTTCTATGTTTCCAATGGCGAGCTCTCTTGCCAGATGTATCAACGCTCTTGTGACATGGGACTCGGTGTTCCATTCAACATTGCGTCCTACGCACTGTTAA
                                                                                                                         ||  | |     | | |||   |       | || |      || |      |||||||||||||    ||||| ||||| ||||||||||||||||||||||||   |||||||| || ||||||||||||||||| || || ||  | ||  | |
gtcagtataatctgtcagcttggtttaagttgaaattagtttttttttacttttaaattacagtagactggtgaacataagttttttcttgataattatgtttttaacattgcttgcattttatttttgatctttttgtcaactaaaaacatttgcattcaacctatccaccttccagTTCTATGTGGAAAATGGGGAGCTATCTTGCCAGATGTATCAACGCTCTGCAGACATGGGGCTTGGTGTTCCATTCAACATCGCATCATATTCTCTCCTGA

upper sequence: EFJ18561 (Selaginella moellendorffii), 3'ss of exon 9
lower sequence: GRMZM2G139880_T01 (Zea mays), 3'ss of exon 7
-----------------------------------------gtaagtctaga----actctcgtcttt---gttttctctgaagcgtgactgtgtgtccagTTCTATGTTTCCAATGGCGAGCTCTCTTGCCAGATGTATCAACGCTCTTGTGACATGGGACTCGGTGTTCCATTCAACATTGCGTCCTACGCACTGTTAA
                                          | | | | ||    | | ||| ||       |||   || | | |       | ||||||| |||||    || || ||||| || |||||||||||||||||||||   |||||||| || ||||||||||||||||| || || ||  | || || |
gttttgcctttgataattacctttgtaacatttgcttgcattttattttcgataacattgtcgactaacaacatttgcatgcaacctattcacct-tccagTTTTATGTGGAGAACGGGGAGCTATCCTGCCAGATGTATCAACGCTCTGCAGACATGGGGCTTGGTGTTCCATTCAACATCGCATCATATTCTCTTTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagtctagaactctcgtctttgttttctctgaagcgtgactgtgtgtccagTTCTATGTTTCCAATGGCGAGCTCTCTTGCCAGATGTATCAACGCTCTTGTGACATGGGACTCGGTGTTCCATTCAACATTGCGTCCTACGCACTGTTAA
                         tttgtttt  TA-rich tract