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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGCCAGATGTATCAACGCTCTTGTGACATGGGACTCGGTGTTCCATTCAACATTGCGTCCTACGCACTGTTAACTTGCATGATCGCGCACGTCTGTGgtatgttcgctacattttcttgtttctcgatatgctatttggctgtttgtattgacaaaaag

Basic information

species Selaginella moellendorffii
transcript EFJ18561
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ18561 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: LOC_Os11g29390.1 (Oryza sativa), 5'ss of exon 9
TCTTGCCAGATGTATCAACGCTCTTGTGACATGGGACTCGGTGTTCCATTCAACATTGCGTCCTACGCACTGTTAACTTGCATGATCGCGCACGTCTGTGgtatgtt---cgctacattttcttgtttctcgata-tgctatttggctgtttgtattgacaaaaag----------------------------------
|| |||||||||||||||||||||  ||| |||||||| |||||||||||||||||||| || ||  | ||  | || | |||||| || || || || ||||||||     ||||  |    |||  || |||| | | |   | ||     ||||||   |  |                                  
TCGTGCCAGATGTATCAACGCTCTGCTGATATGGGACTTGGTGTTCCATTCAACATTGCATCATATTCTCTTCTGACATACATGATTGCTCATGTTTGCGgtatgttatcttctaccctgctatgtgactggataatcccaaaggtctaaccttattgatgtattgttcagcgtaagactgtttgttgttgatgttgtat

upper sequence: EFJ18561 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: LOC_Os12g26060.1 (Oryza sativa), 5'ss of exon 7
TCTTGCCAGATGTATCAACGCTCTTGTGACATGGGACTCGGTGTTCCATTCAACATTGCGTCCTACGCACTGTTAACTTGCATGATCGCGCACGTCTGTGgtatgttcgctacattttcttgtttctcgatatgctatttggctgtttgtattgacaaaaag----------------------------------------
|| ||||||||||| |||||||||  ||| ||||| |||||||| |||||||||||||| || ||  | ||  | || || ||||| || || || |||||||||||| | || |  |  | ||| |  |   | |||| |  | ||  ||  | ||||                                           
TCATGCCAGATGTACCAACGCTCTGCTGATATGGGGCTCGGTGTGCCATTCAACATTGCATCATATTCTCTTCTGACATGTATGATTGCACAAGTGTGTGgtatgttctc-acttgcttatctttttacaccggttattcgttt-ttcctaaagtcaaagcttcaaactagaacccattgcacatgctaattattcgtaaca

upper sequence: EFJ18561 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: GRMZM2G005990_T01 (Zea mays), 5'ss of exon 9
TCTTGCCAGATGTATCAACGCTCTTGTGACATGGGACTCGGTGTTCCATTCAACATTGCGTCCTACGCACTGTTAACTTGCATGATCGCGCACGTCTGTGgtatgtt-----cgctacattttcttgtttctcgatatgctatt--tggctgtttgtattgacaaaaag-------------------------------
||||||||||||||||||||||||   |||||||| || ||||||||||||||||| || || ||  | ||  | || | |||||| || || || ||||||| |||      ||   | | |  | |||| |  ||  | | |  |   |||     || | | |||                                
TCTTGCCAGATGTATCAACGCTCTGCAGACATGGGGCTTGGTGTTCCATTCAACATCGCATCATATTCTCTCCTGACATACATGATTGCTCAAGTTTGTGgtaggttttaaatgccttactctaatatttccccttagtccaatgtttattgtgcaccttaatacaaaccttattggttgtactgtatatcagtattcta

upper sequence: EFJ18561 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: GRMZM2G139880_T01 (Zea mays), 5'ss of exon 8
TCTTGCCAGATGTATCAACGCTCTTGTGACATGGGACTCGGTGTTCCATTCAACATTGCGTCCTACGCACTGTTAACTTGCATGATCGCGCACGTCTGTGgtatgttc------gctacattttcttgtttct-cgatatgctat-ttggctgtttgtattgacaaaaag------------------------------
|| |||||||||||||||||||||   |||||||| || ||||||||||||||||| || || ||  | || || || |  ||||| || || || ||||||| ||||      ||  || | |  | ||||| |    ||| |  ||   |||     || | | |||                               
TCCTGCCAGATGTATCAACGCTCTGCAGACATGGGGCTTGGTGTTCCATTCAACATCGCATCATATTCTCTTTTGACATATATGATTGCTCAAGTTTGTGgtaggttcttatatgcatcactgtaatatttctactcagtgcaacgtttattgtgcaccttaatagaaaccttcttggttgtacatgtactgtatttgtg