1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCACCTGGCGTGTGGGAGGCGTCCTGGCAGTTTCACGAGCGTTTGGAGACAGGCTCTTGAAGCAATTCGTTGTTGCCATTCCAGAGATAAAGgttcgaagctgtttttaggaagtcgtcgattgtaagctctctttattttag
species | Selaginella moellendorffii |
transcript | EFJ17647 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGGAGACAGGCTCTTGAAGCAATTCGTTGTTGCCATTCCAGAGATAAAG GAGGAGGTGATAACGGAAGATGTGNAGTTTTTCGTGATCGCCAGCGACGGCEST: gi|169035885|gb|FE442353.1|FE442353
genomic: TTGGAGACAGGCTCTTGAAGCAATTCGTTGTTGCCATTCCAGAGATAAAGgttcgaagct ... tttattttagGAGGAGGTGATAACGGAAGATGTGGAGTTTTTCGTGATCGCCAGCGACGGC
EST: TGGGAGACAGGCTCTTGAAGCAATTCGTTGTTGCCTTTCCAGAGATAAAG GGGGAGGTGATAACGGAAGATGTGGAGTTTTTCGTGATCGCCAGCGACGGCEST: gi|169116395|gb|FE517758.1|FE517758
genomic: TTGGAGACAGGCTCTTGAAGCAATTCGTTGTTGCCATTCCAGAGATAAAGgttcgaagct ... tttattttagGAGGAGGTGATAACGGAAGATGTGGAGTTTTTCGTGATCGCCAGCGACGGC
EST: TTGGAGACAGGCTCTTGAAGCAATTCGTTGTTGCCATTCCAGAGATAAAG GAGGAGGTGATAACGGAAGATGTGGAGTTTTTCGTGATCGCCAGCGACGGCEST: gi|169035312|gb|FE442638.1|FE442638
genomic: TTGGAGACAGGCTCTTGAAGCAATTCGTTGTTGCCATTCCAGAGATAAAGgttcgaagct ... tttattttagGAGGAGGTGATAACGGAAGATGTGGAGTTTTTCGTGATCGCCAGCGACGGC
EST: TTGGAGACAGGCTCTTGAAGCAATTCGTTGTTGCCATTCCAGAGATAAAG GAGGAGGTGATAACGGAAGATGTGGAGTTTTTCGTGATCGCCAGCGACGGGEST: gi|169102661|gb|FE503947.1|FE503947
genomic: TTGGAGACAGGCTCTTGAAGCAATTCGTTGTTGCCATTCCAGAGATAAAGgttcgaagct ... tttattttagGAGGAGGTGATAACGGAAGATGTGGAGTTTTTCGTGATCGCCAGCGACGGC
EST: TTGGAGACAGGCTCTTGAAGCAATTCGTTGTTGCCATTCCAGAGATAAAG GAGGAGGTGATAACGGAAGATGTGGAGTTTTTCGTGATCGCCAGCGACGGCEST: gi|169116396|gb|FE517759.1|FE517759
genomic: TTGGAGACAGGCTCTTGAAGCAATTCGTTGTTGCCATTCCAGAGATAAAGgttcgaagct ... tttattttagGAGGAGGTGATAACGGAAGATGTGGAGTTTTTCGTGATCGCCAGCGACGGC
EST: TTGGAGACAGGCTCTTGAAGCAATTCGTTGTTGCCATTCCAGAGATAAAG GAGGAGGTGATAACGGAAGATGTGGAGTTTTTCGTGATCGCCAGCGACGGCEST: gi|169034316|gb|FE443089.1|FE443089
genomic: TTGGAGACAGGCTCTTGAAGCAATTCGTTGTTGCCATTCCAGAGATAAAGgttcgaagct ... tttattttagGAGGAGGTGATAACGGAAGATGTGGAGTTTTTCGTGATCGCCAGCGACGGC
EST: TTGGAGACAGGCTCTTGAAGCAATTCGTTGTTGCCATTCCAGAGATAAAG GAGGAGGTGATAACGGAAGATGTGGAGTTTTTCGTGATCGCCAGCGACGGC
genomic: TTGGAGACAGGCTCTTGAAGCAATTCGTTGTTGCCATTCCAGAGATAAAGgttcgaagct ... tttattttagGAGGAGGTGATAACGGAAGATGTGGAGTTTTTCGTGATCGCCAGCGACGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACCTGGCGTGTGGGAGGCGTCCTGGCAGTTTCACGAGCGTTTGGAGACAGGCTCTTGAAGCAATTCGTTGTTGCCATTCCAGAGATAAAGgttcgaagctgtttttaggaagtcgtcgattgtaagctctctttattttag
- - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA