1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatatgatcgtttatcttctttctcttgaggtgccaagtgtgtccttgttttcctgcagCTGACACCTACAAGCAAACAGACGATGACTATCTAAAAGACGAGAAGGACCAGTTCAGAGACGCTGGAACCACGGCTTCCACTGCACTACTGGTTGGCAA
species | Selaginella moellendorffii |
transcript | EFJ17647 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAATGTGATCAGCCATCCTCAATTCACAAGCGACATCAAGTTTGCAATCG CTGACACCTACAAGCAAACAGACGATGACTATCTAAAAGACGAGAAGGACCEST: gi|169116395|gb|FE517758.1|FE517758
genomic: GAATGTGATCAGCCATCCTCAATTCACAAGCGACATCAAGTTTGCAATCGgtatatgatc ... tttcctgcagCTGACACCTACAAGCAAACAGACGATGACTATCTAAAAGACGAGAAGGACC
EST: CAGCCATCCTCAATTCACAAGCGACATCAAGTTTGCAATCG CTGACACCTACAAGCAAACAGACGATGACTATCTAAAAGACGAGAAGGACCEST: gi|169035312|gb|FE442638.1|FE442638
genomic: CAGCCATCCTCAATTCACAAGCGACATCAAGTTTGCAATCGgtatatgatc ... tttcctgcagCTGACACCTACAAGCAAACAGACGATGACTATCTAAAAGACGAGAAGGACC
EST: GAATGTGATCAGCCATCCTCAATTCACGAGCGACATCAAGTTTGCAATCG CTGACACCTACAAGCAAACAGACGATGACTATCTAAAAGACGAGAAGGACCEST: gi|169116396|gb|FE517759.1|FE517759
genomic: GAATGTGATCAGCCATCCTCAATTCACAAGCGACATCAAGTTTGCAATCGgtatatgatc ... tttcctgcagCTGACACCTACAAGCAAACAGACGATGACTATCTAAAAGACGAGAAGGACC
EST: GAATGTGATCAGCCATCCTCAATTCACAAGCGACATCAAGTTTGCAATCG CTGACACCTACAAGCAAACAGACGATGACTATCTAAAAGACGAGAAGGACCEST: gi|169034316|gb|FE443089.1|FE443089
genomic: GAATGTGATCAGCCATCCTCAATTCACAAGCGACATCAAGTTTGCAATCGgtatatgatc ... tttcctgcagCTGACACCTACAAGCAAACAGACGATGACTATCTAAAAGACGAGAAGGACC
EST: TCAATTCACAAGCGACATCAAGTTTGCAATCG CTGACACCTACAAGCAAACAGACGATGACTATCTAAAAGACGAGAAGGACC
genomic: TCAATTCACAAGCGACATCAAGTTTGCAATCGgtatatgatc ... tttcctgcagCTGACACCTACAAGCAAACAGACGATGACTATCTAAAAGACGAGAAGGACC
tgatcgtttatcttctttctcttgaggtgccaagtgtgtccttgttttcctgcagCTGACACCTACAAGCAAACAGACGATGACTATCTAAAAGACGAGAAGGACCAGTTCAGAGACGCTGGAACCACGGCTTCCACTGCACTACTGGTTGGCAA
tgtccttgttttcct CT-rich tract
tttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatgatcgtttatcttctttctcttgaggtgccaagtgtgtccttgttttcctgcagCTGACACCTACAAGCAAACAGACGATGACTATCTAAAAGACGAGAAGGACCAGTTCAGAGACGCTGGAACCACGGCTTCCACTGCACTACTGGTTGGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA