1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagcaaagagtttctcctttccgatggaaaatctatctaacgagattttgcaacagATCCGAAAGCGCCTGTGTGGATCCAGACCGAGAGCCGGAGCGTAAGACGAAGAACTCGCCATGCATTCTATTATTTACAATATAGGCGTGGTAAAAGAAG
species | Selaginella moellendorffii |
transcript | EFJ17636 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACACTCTGGACTCTCGCCTCGAAATCGTTCACAAGCAAAACCTCCCAGAA ATCCGAAAGCGCCTGTGTGGATCCAGACCGAGAGCCGGAGCGTAAGACGAAEST: gi|169101756|gb|FE501248.1|FE501248
genomic: ACACTCTGGACTCTCGCCTCGAAATCGTTCACAAGCAAAACCTCCCAGAAgtaagcaaag ... tttgcaacagATCCGAAAGCGCCTGTGTGGATCCAGACCGAGAGCCGGAGCGTAAGACGAA
EST: ACACTCTGGACTCTCGCCTCGAAATCGTTCACAAGCAAAACCTCCCAGAA ATCCGAAAGCGCCTGTGTGGATCCAGACCGAGAGCCGGAGCGTAAGACGAAEST: gi|169055127|gb|FE461027.1|FE461027
genomic: ACACTCTGGACTCTCGCCTCGAAATCGTTCACAAGCAAAACCTCCCAGAAgtaagcaaag ... tttgcaacagATCCGAAAGCGCCTGTGTGGATCCAGACCGAGAGCCGGAGCGTAAGACGAA
EST: ACACTCTGGACTCTCGCCTCGAAATCGTTCACAAGCAAAACCTCCCAGAA ATCCGAAAGCGCCTGTGTGGATCCAGACCGAGAGCCGGAGCGTAAGACGAA
genomic: ACACTCTGGACTCTCGCCTCGAAATCGTTCACAAGCAAAACCTCCCAGAAgtaagcaaag ... tttgcaacagATCCGAAAGCGCCTGTGTGGATCCAGACCGAGAGCCGGAGCGTAAGACGAA
agcaaagagtttctcctttccgatggaaaatctatctaacgagattttgcaacagATCCGAAAGCGCCTGTGTGGATCCAGACCGAGAGCCGGAGCGTAAGACGAAGAACTCGCCATGCATTCTATTATTTACAATATAGGCGTGGTAAAAGAAG
atctaac putative branch site (score: 17)
aaaatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaaagagtttctcctttccgatggaaaatctatctaacgagattttgcaacagATCCGAAAGCGCCTGTGTGGATCCAGACCGAGAGCCGGAGCGTAAGACGAAGAACTCGCCATGCATTCTATTATTTACAATATAGGCGTGGTAAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG