1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagttccatccttctttgtcttcgctttttgtctcgttatcctcctttcggacagcttaaaagcttgattttcgctgttttgtagCGAGTACTCCACGCAGCTCAATGCGTCGCGCTTGAAAATCCTGCAAGCGCAGGACGATCTCGTCCGTGAGATGAAGGACGCTGCCATGAAGCAGCTCCAA
species | Selaginella moellendorffii |
transcript | EFJ17636 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCCAAGAATACGAGCGCAAGGAGAAACAAATCGAGGTTCGTCGAAAGAT CGAGTACTCCACGCAGCTCAATGCGTCGCGCTTGAAAATCCTGCAAGCGCA
genomic: CGCCAAGAATACGAGCGCAAGGAGAAACAAATCGAGGTTCGTCGAAAGATgtgagttcca ... tgttttgtagCGAGTACTCCACGCAGCTCAATGCGTCGCGCTTGAAAATCCTGCAAGCGCA
gtctcgttatcctcctttcggacagcttaaaagcttgattttcgctgttttgtagCGAGTACTCCACGCAGCTCAATGCGTCGCGCTTGAAAATCCTGCAAGCGCAGGACGATCTCGTCCGTGAGATGAAGGACGCTGCCATGAAGCAGCTCCAA
gcttgat putative branch site (score: 25)
ttttcgct CT-rich tract
ttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttccatccttctttgtcttcgctttttgtctcgttatcctcctttcggacagcttaaaagcttgattttcgctgttttgtagCGAGTACTCCACGCAGCTCAATGCGTCGCGCTTGAAAATCCTGCAAGCGCAGGACGATCTCGTCCGTGAGATGAAGGACGCTGCCATGAAGCAGCTCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC