1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaagtttgccacttttgttagagaacttttaatgattttgttcctccaagaaaacagGAAATCATCGCAGCTCTTCCCAAGAGATTGAAAGTCGTCGATCTCTCGGCT
species | Selaginella moellendorffii |
transcript | EFJ17635 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTCCGACGTCGAGGCCGTTTTCTGCTGCCTCCCGCATGGAACAACTCAG GAAATCATCGCAGCTCTTCCCAAGAGATTGAAAGTCGTCGATCTCTCGGCTEST: gi|169113609|gb|FE514520.1|FE514520
genomic: TCTCCGACGTCGAGGCCGTTTTCTGCTGCCTCCCGCATGGAACAACTCAGgtaaagtttg ... aagaaaacagGAAATCATCGCAGCTCTTCCCAAGAGATTGAAAGTCGTCGATCTCTCGGCT
EST: TCTCCGACGTCGAGGCCGTTTTCTGCTGCCTCCCGCATGGAACAACTCAA GAAATCATCGCAGCTCTTCCCAAGAGATTGAAAGTCGTCGATCTCTCGGCTEST: gi|169069579|gb|FE478219.1|FE478219
genomic: TCTCCGACGTCGAGGCCGTTTTCTGCTGCCTCCCGCATGGAACAACTCAGgtaaagtttg ... aagaaaacagGAAATCATCGCAGCTCTTCCCAAGAGATTGAAAGTCGTCGATCTCTCGGCT
EST: TCTCCGACGTCGAGGCCGTTTTCTGCTGCCTCCCGCATGGAACAACTCAG GAAATCATCGCAGCTCTTCCCAAGAGATTGAAAGTCGTCGATCTCTCGGCT
genomic: TCTCCGACGTCGAGGCCGTTTTCTGCTGCCTCCCGCATGGAACAACTCAGgtaaagtttg ... aagaaaacagGAAATCATCGCAGCTCTTCCCAAGAGATTGAAAGTCGTCGATCTCTCGGCT
agtttgccacttttgttagagaacttttaatgattttgttcctccaagaaaacagGAAATCATCGCAGCTCTTCCCAAGAGATTGAAAGTCGTCGATCTCTCGGCT
ttttaat putative branch site (score: 6)
ttcctcca putative PPT
aacttttaatgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagtttgccacttttgttagagaacttttaatgattttgttcctccaagaaaacagGAAATCATCGCAGCTCTTCCCAAGAGATTGAAAGTCGTCGATCTCTCGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA