1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGTCAAGGAGGAGATTGATCCGTCTGGACTGAAGCAGCGGCAGGGAGAAGAGAGGATTCCGGTGGGAGTGCTTGGAGCGAGTGGCTACACTGGATCAGAGgtatggttttttctttcttttgcttttggttgaagaaactttggttgttctcgggatcatag
species | Selaginella moellendorffii |
transcript | EFJ17635 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGAGGATTCCGGTGGGAGTGCTTGGAGCGAGTGGCTACACTGGATCAGAG GTGATACGATTGTTGGCAACGCATCCTTTTTTCAATGTGAAGCTCATGACCEST: gi|169113609|gb|FE514520.1|FE514520
genomic: AGAGGATTCCGGTGGGAGTGCTTGGAGCGAGTGGCTACACTGGATCAGAGgtatggtttt ... gggatcatagGTGATACGATTGTTGGCAACGCATCCTTTTTTCAATGTGAAGCTCATGACC
EST: AGAGGATTCCGGTGGGAGTGCTTGGAGCGAGTGGCTACACTGGATCAGAG GTGATACCATTGTTGGCAACGCATCCTTTTTTCAATGTGAAGCTCATGACCEST: gi|169069579|gb|FE478219.1|FE478219
genomic: AGAGGATTCCGGTGGGAGTGCTTGGAGCGAGTGGCTACACTGGATCAGAGgtatggtttt ... gggatcatagGTGATACGATTGTTGGCAACGCATCCTTTTTTCAATGTGAAGCTCATGACC
EST: AGAGGATTCCGGTGGGAGTGCTTGGAGCGAGTGGCTACACTGGATCAGAG GTGATACGATTGTTGGCAACGCATCCTTTTTTCAATGTGAAGCTCATGACC
genomic: AGAGGATTCCGGTGGGAGTGCTTGGAGCGAGTGGCTACACTGGATCAGAGgtatggtttt ... gggatcatagGTGATACGATTGTTGGCAACGCATCCTTTTTTCAATGTGAAGCTCATGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCAAGGAGGAGATTGATCCGTCTGGACTGAAGCAGCGGCAGGGAGAAGAGAGGATTCCGGTGGGAGTGCTTGGAGCGAGTGGCTACACTGGATCAGAGgtatggttttttctttcttttgcttttggttgaagaaactttggttgttctcgggatcatag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG