1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtaagtagcttcaaacttctactgctaagattccctgttttgttctctcttacgagcatgatttggtcagATCGATAGCCAGATGAAGAGACTAGACGAGGATTTAAACCAGTTCGCGGAGGATCTCAAGCTTG
species | Selaginella moellendorffii |
transcript | EFJ17564 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAGCCTTTGCACGGAGAAAGTTTTGCTAGCACAGCAAGCTTACGACTTG ATCGATAGCCAGATGAAGAGACTAGACGAGGATTTAAACCAGTTCGCGGAGEST: gi|169061309|gb|FE470396.1|FE470396
genomic: GGAGCCTTTGCACGGAGAAAGTTTTGCTAGCACAGCAAGCTTACGACTTGgtaagtaagt ... atttggtcagATCGATAGCCAGATGAAGAGACTAGACGAGGATTTAAACCAGTTCGCGGAG
EST: GGAGCCTTTGCACGGAGAAAGTTTTGCTAGCACAGCAAGCTTACGACTTG ATCGATAGCCAGATGAAGAGACTAGACGAGGATTTAAACCAGTTCGCGGAG
genomic: GGAGCCTTTGCACGGAGAAAGTTTTGCTAGCACAGCAAGCTTACGACTTGgtaagtaagt ... atttggtcagATCGATAGCCAGATGAAGAGACTAGACGAGGATTTAAACCAGTTCGCGGAG
cttctactgctaagattccctgttttgttctctcttacgagcatgatttggtcagATCGATAGCCAGATGAAGAGACTAGACGAGGATTTAAACCAGTTCGCGGAGGATCTCAAGCTTG
ctcttac putative branch site (score: 5)
taagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaagtagcttcaaacttctactgctaagattccctgttttgttctctcttacgagcatgatttggtcagATCGATAGCCAGATGAAGAGACTAGACGAGGATTTAAACCAGTTCGCGGAGGATCTCAAGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT