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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctttagcactcgtcatttatcctctactcacttcgcaatttcagGATAAACAACCGGAAGGCGAAACTCGCCAAGCTGGCTAAAGAGGGCCGTTTGGATCCCGCCGTTGTCAACAGACCAAAACCATGCTACGTTAGTAGCAGC

Basic information

species Selaginella moellendorffii
transcript EFJ13100
intron # 18
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169057453|gb|FE465757.1|FE465757
EST:     GGTCCCGAGATCACTACTGGTCAGCTAAAGAACTG                         GATAAACAACCGGAAGGCGAAACTCGCCAAGCTGGCTAAAGAGGGCCGTTT
genomic: GGTCCCGAGATCACTACTGGTCAGCTAAAGAACTGgtaagcttta ... gcaatttcagGATAAACAACCGGAAGGCGAAACTCGCCAAGCTGGCTAAAGAGGGCCGTTT
EST: gi|169023445|gb|FE430069.1|FE430069
EST:     CAACAAGATGGGTCCCGAGATCACTACTGGTCAGCTAAAGAACTG                         GATAAACAACCGGAAGGCGAAACTCGCCAAGCTGGCTAAAGAGGGCCGTTT
genomic: CAACAAGATGGGTCCCGAGATCACTACTGGTCAGCTAAAGAACTGgtaagcttta ... gcaatttcagGATAAACAACCGGAAGGCGAAACTCGCCAAGCTGGCTAAAGAGGGCCGTTT
EST: gi|169057454|gb|FE465758.1|FE465758
EST:     GGTCCCGAGATCACTACTGGTCAGCTAAAGAACTG                         GATAAACAACCGGAAGGCGAAACTCGCCAAGCTGGCTAAAGAGGGCCGTTT
genomic: GGTCCCGAGATCACTACTGGTCAGCTAAAGAACTGgtaagcttta ... gcaatttcagGATAAACAACCGGAAGGCGAAACTCGCCAAGCTGGCTAAAGAGGGCCGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagctttagcactcgtcatttatcctctactcacttcgcaatttcagGATAAACAACCGGAAGGCGAAACTCGCCAAGCTGGCTAAAGAGGGCCGTTTGGATCCCGCCGTTGTCAACAGACCAAAACCATGCTACGTTAGTAGCAGC
                                   tactcac  putative branch site (score: 1)
                             tcatttat  TA-rich tract