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gtatcattatgcattttctcttctgtgattactaatgtggttttgtggttctagTGTTTTTGCTGCAGAGTTACATGAAGCATTTTGCTTATCTCCCGACGTGCATGCG
species | Selaginella moellendorffii |
transcript | EFJ13100 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GCTTCGCTTCCTTCTGATTTGGCAAACGACGAGGATGTCCAGCTTGCTAG TGTTTTTGCTGCAGAGTTACATGAAGCATTTTGCTTATCTCCCGACGTGCAEST: gi|169109396|gb|FE510259.1|FE510259
genomic: GCTTCGCTTCCTTCTGATTTGGCAAACGACGAGGATGTCCAGCTTGCTAGgtatcattat ... gtggttctagTGTTTTTGCTGCAGAGTTACATGAAGCATTTTGCTTATCTCCCGACGTGCA
EST: GCTTCGCTTCCTTCTGATTTGGCAAACGACGAGGATGTCCAGCTTGCTAG TGTTTTTGCTGCAGAGTTACATGAAGCATTTTGCTTATCTCCCGACGTGCA
genomic: GCTTCGCTTCCTTCTGATTTGGCAAACGACGAGGATGTCCAGCTTGCTAGgtatcattat ... gtggttctagTGTTTTTGCTGCAGAGTTACATGAAGCATTTTGCTTATCTCCCGACGTGCA
gtatcattatgcattttctcttctgtgattactaatgtggttttgtggttctagTGTTTTTGCTGCAGAGTTACATGAAGCATTTTGCTTATCTCCCGACGTGCATGCG
tactaat putative branch site (score: 2)
attactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcattatgcattttctcttctgtgattactaatgtggttttgtggttctagTGTTTTTGCTGCAGAGTTACATGAAGCATTTTGCTTATCTCCCGACGTGCATGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC