1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagcttatgccagcatctggaggaactaacgtcgtcttctgtcgcagTTCCCGACTTTCGAGGCGATCCCGACTGCGTGGAGAAAGTGGCCACCTCTGGACTGGACGTCTTTGCGCACAACATAGAAACCGTGCAAGAGCTACAGAG
species | Selaginella moellendorffii |
transcript | EFJ13029 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTGAGGAGGATCAAGCAACGCAAGCCGGGCATGCTGGTTGAGGCCTTAG TTCCCGACTTTCGAGGCGATCCCGACTGCGTGGAGAAAGTGGCCACCTCTGEST: gi|169106453|gb|FE507452.1|FE507452
genomic: AGTGAGGAGGATCAAGCAACGCAAGCCGGGCATGCTGGTTGAGGCCTTAGgtgagcttat ... tctgtcgcagTTCCCGACTTTCGAGGCGATCCCGACTGCGTGGAGAAAGTGGCCACCTCTG
EST: AGTGAGGAGGATCAAGCAACGCAAGCCGGGCATGCTGGTTGAGGCCTTAG TTCCCGACTTTCGAGGCGATCCCGACTGCGTGGAGAAAGTGGCCACCTCTGEST: gi|169048495|gb|FE454403.1|FE454403
genomic: AGTGAGGAGGATCAAGCAACGCAAGCCGGGCATGCTGGTTGAGGCCTTAGgtgagcttat ... tctgtcgcagTTCCCGACTTTCGAGGCGATCCCGACTGCGTGGAGAAAGTGGCCACCTCTG
EST: AGTGAGGAGGATCAAGCAACGCAAGCCGGGCATGCTGGTTGAGGCCTTAG TTCCCGACTTTCGAGGCGATCCCGACTGCGTGGAGAAAGTGGCCACCTCTGEST: gi|169042766|gb|FE452001.1|FE452001
genomic: AGTGAGGAGGATCAAGCAACGCAAGCCGGGCATGCTGGTTGAGGCCTTAGgtgagcttat ... tctgtcgcagTTCCCGACTTTCGAGGCGATCCCGACTGCGTGGAGAAAGTGGCCACCTCTG
EST: AGTGAGGAGGATCAAGCAACGCAAGCCGGGCATGCTGGTTGAGGCCTTAG TTCCCGACTTTCGAGGCGATCCCGACTGCGTGGAGAAAGTGGCCACCTCTGEST: gi|169048494|gb|FE454402.1|FE454402
genomic: AGTGAGGAGGATCAAGCAACGCAAGCCGGGCATGCTGGTTGAGGCCTTAGgtgagcttat ... tctgtcgcagTTCCCGACTTTCGAGGCGATCCCGACTGCGTGGAGAAAGTGGCCACCTCTG
EST: AGTGAGGAGGATCAAGCAACGCAAGCCGGGCATGCTGGTTGAGGCCTTAG TTCCCGACTTTCGAGGCGATCCCGACTGCGTGGAGAAAGTGGCCACCTCTGEST: gi|169073648|gb|FE481360.1|FE481360
genomic: AGTGAGGAGGATCAAGCAACGCAAGCCGGGCATGCTGGTTGAGGCCTTAGgtgagcttat ... tctgtcgcagTTCCCGACTTTCGAGGCGATCCCGACTGCGTGGAGAAAGTGGCCACCTCTG
EST: AGTGAGGAGGATCAAGCAACGCAAGCCGGGCATGCTGGTTGAGGCCTTAG TTCCCGACTTTCGAGGCGATCCCGACTGCGTGGAGAAAGTGGCCACCTCTG
genomic: AGTGAGGAGGATCAAGCAACGCAAGCCGGGCATGCTGGTTGAGGCCTTAGgtgagcttat ... tctgtcgcagTTCCCGACTTTCGAGGCGATCCCGACTGCGTGGAGAAAGTGGCCACCTCTG
gtgagcttatgccagcatctggaggaactaacgtcgtcttctgtcgcagTTCCCGACTTTCGAGGCGATCCCGACTGCGTGGAGAAAGTGGCCACCTCTGGACTGGACGTCTTTGCGCACAACATAGAAACCGTGCAAGAGCTACAGAG
aactaac putative branch site (score: 12)
tcgtcttct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcttatgccagcatctggaggaactaacgtcgtcttctgtcgcagTTCCCGACTTTCGAGGCGATCCCGACTGCGTGGAGAAAGTGGCCACCTCTGGACTGGACGTCTTTGCGCACAACATAGAAACCGTGCAAGAGCTACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT