1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgcattgccacgtagtcaaattttgctgctactagtttttctgtttcagGTTCACACCTGTTCCTGTGTCGGCTATTTCCGGTTCTGGTGTCCCGGATTTACTCGAGGATGTGACTTCCGCAATCAAGGAGAAACAG
species | Selaginella moellendorffii |
transcript | EFJ13010 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAATCTCCAAAGAAAGGACTCTTGCAGGCGGCAGAGTTTTGGTCTCTCGG GTTCACACCTGTTCCTGTGTCGGCTATTTCCGGTTCTGGTGTCCCGGATTTEST: gi|169088463|gb|FE495509.1|FE495509
genomic: GAATCTCCAAAGAAAGGACTCTTGCAGGCGGCAGAGTTTTGGTCTCTCGGgtatgcattg ... tctgtttcagGTTCACACCTGTTCCTGTGTCGGCTATTTCCGGTTCTGGTGTCCCGGATTT
EST: GAATCTCCAAAGAAAGGACTCTTGCAGGCGGCAGAGTTTTGGTCTCTCGG GTTCACACCTGTTCCTGTGTCGGCTATTTCCGGTTCTGGTGTCCCGGATTT
genomic: GAATCTCCAAAGAAAGGACTCTTGCAGGCGGCAGAGTTTTGGTCTCTCGGgtatgcattg ... tctgtttcagGTTCACACCTGTTCCTGTGTCGGCTATTTCCGGTTCTGGTGTCCCGGATTT
gtatgcattgccacgtagtcaaattttgctgctactagtttttctgtttcagGTTCACACCTGTTCCTGTGTCGGCTATTTCCGGTTCTGGTGTCCCGGATTTACTCGAGGATGTGACTTCCGCAATCAAGGAGAAACAG
tttttctgtttc CT-rich tract
tcaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcattgccacgtagtcaaattttgctgctactagtttttctgtttcagGTTCACACCTGTTCCTGTGTCGGCTATTTCCGGTTCTGGTGTCCCGGATTTACTCGAGGATGTGACTTCCGCAATCAAGGAGAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA