1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaagctggtgttttcgagttgttttcgttgttctaactctggaagtttgctctctttgtttgcagCATATGAGGTCGATGAGTAGCTCCCCTCTGAGCAGCCGGATACATAACAGGCTCCAGAATGCCGTGCTTCGATCTAGCGGAGGAATCAACGGGGTCTCGG
species | Selaginella moellendorffii |
transcript | EFJ12999 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGGAGGAGAGGGGCTGACCGAGGAGGAGATTAGTGCGTTTTATCGAGAG CATATGAGGTCGATGAGTAGCTCCCCTCTGAGCAGCCGGATACATAACAGGEST: gi|169111334|gb|FE509648.1|FE509648
genomic: AGGGAGGAGAGGGGCTGACCGAGGAGGAGATTAGTGCGTTTTATCGAGAGgtaaagctgg ... ttgtttgcagCATATGAGGTCGATGAGTAGCTCCCCTCTGAGCAGCCGGATACATAACAGG
EST: AGGGAGGAGAGGGGCTGACCGAGGAGGAGATTAGTGCGTTTTATCGAGAG CATATGAGGTCGATGAGTAGCTCCCCTCTGAGCAGCCGGATACATAACAGGEST: gi|169032320|gb|FE439356.1|FE439356
genomic: AGGGAGGAGAGGGGCTGACCGAGGAGGAGATTAGTGCGTTTTATCGAGAGgtaaagctgg ... ttgtttgcagCATATGAGGTCGATGAGTAGCTCCCCTCTGAGCAGCCGGATACATAACAGG
EST: AGGGAGGAGAGGGGCTGACCGAGGAGGAGATTAGTGCGTTTTATCGAGAG CATATGAGGTCGATGAGTAGCTCCCCTCTGAGCAGCCGGATACATAACAGG
genomic: AGGGAGGAGAGGGGCTGACCGAGGAGGAGATTAGTGCGTTTTATCGAGAGgtaaagctgg ... ttgtttgcagCATATGAGGTCGATGAGTAGCTCCCCTCTGAGCAGCCGGATACATAACAGG
ttttcgagttgttttcgttgttctaactctggaagtttgctctctttgtttgcagCATATGAGGTCGATGAGTAGCTCCCCTCTGAGCAGCCGGATACATAACAGGCTCCAGAATGCCGTGCTTCGATCTAGCGGAGGAATCAACGGGGTCTCGG
ttctaac putative branch site (score: 8)
tttgctctctttgttt putative PPT
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagctggtgttttcgagttgttttcgttgttctaactctggaagtttgctctctttgtttgcagCATATGAGGTCGATGAGTAGCTCCCCTCTGAGCAGCCGGATACATAACAGGCTCCAGAATGCCGTGCTTCGATCTAGCGGAGGAATCAACGGGGTCTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA