1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaatgaaaccttttttatttttttcctcgctcttctaacgggatttactctttgcagGCTCTCAACTCTCGGGACAAAGCCAAGCCAAAGCTGACCAGCCTGGTGTCCCCTAGCACACCAAAGATCACTCAAGCTCCGAGCAGCCCGATGCTTAGAC
species | Selaginella moellendorffii |
transcript | EFJ12999 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACTGGCTCTCAAACAGTCCAGGCAGCTTGTGCCGATGATTCCAAAGACG GCTCTTAACTCTCGGGACAAAGCCAAGCCAAAGCTGACAAGCCTGGTGTCCEST: gi|169026111|gb|FE435321.1|FE435321
genomic: AACTGGCTCTTAAACAGTCCAGGCAGCTTGTGCCGATGATTCCAAAGACGgtaaatgaaa ... ctctttgcagGCTCTCAACTCTCGGGACAAAGCCAAGCCAAAGCTGACCAGCCTGGTGTCC
EST: AACTGGCTCTCAAACAGTCCAGGCAGCTTGTGCCGATGATTCCAAAGACG GCTCTTAACTCTCGGGACAAAGCCAAGCCAAAGCTGACAAGCCTGGTGTCCEST: gi|169032321|gb|FE439357.1|FE439357
genomic: AACTGGCTCTTAAACAGTCCAGGCAGCTTGTGCCGATGATTCCAAAGACGgtaaatgaaa ... ctctttgcagGCTCTCAACTCTCGGGACAAAGCCAAGCCAAAGCTGACCAGCCTGGTGTCC
EST: AACTGGCTCTTAAACAGTCCAGGCAGCTTGTGCCGATGATTCCAAAGACG GCTCTCAACTCTCGGGACAAAGCCAAGCCAAAGCTGACCAGCCTGGTGTCC
genomic: AACTGGCTCTTAAACAGTCCAGGCAGCTTGTGCCGATGATTCCAAAGACGgtaaatgaaa ... ctctttgcagGCTCTCAACTCTCGGGACAAAGCCAAGCCAAAGCTGACCAGCCTGGTGTCC
atgaaaccttttttatttttttcctcgctcttctaacgggatttactctttgcagGCTCTCAACTCTCGGGACAAAGCCAAGCCAAAGCTGACCAGCCTGGTGTCCCCTAGCACACCAAAGATCACTCAAGCTCCGAGCAGCCCGATGCTTAGAC
ttctaac putative branch site (score: 1)
tttactcttt putative PPT
accttttttatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgaaaccttttttatttttttcctcgctcttctaacgggatttactctttgcagGCTCTCAACTCTCGGGACAAAGCCAAGCCAAAGCTGACCAGCCTGGTGTCCCCTAGCACACCAAAGATCACTCAAGCTCCGAGCAGCCCGATGCTTAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG