1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCTTACGTCAAGGAGATTGATGAAAACAAGACAACGCTGTTGCTCTTGAATAAATCTGATCTACTGCCCGTCGCAATAAGgtgtgcattcagttctgtttcaaaacaaactcttaggcttgcttattttcttccag
species | Selaginella moellendorffii |
transcript | EFJ12962 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACAACGCTGTTGCTCTTGAATAAATCTGATCTACTGCCCGTCGCAATAAG NNNNNNNTGGGCAAGCTACTTTGACGAGCTGGGACTGGATTATATCTTCTGEST: gi|169069734|gb|FE478296.1|FE478296
genomic: ACAACGCTGTTGCTCTTGAATAAATCTGATCTACTGCCCGTCGCAATAAGgtgtgcattc ... tttcttccagAAAAAAATGGGCAAGCTACTTTGACGAGCTGGGACTGGATTATATCTTCTG
EST: ACAACGCTGTTGCTCTTGAATAAATCTGATCTACTGCCCGTCGCAATAAG NNNNNNNTGGGCAAGCTACTTTGACGAGCTGGGACTGGATTATATCTTCTGEST: gi|169045721|gb|FE451694.1|FE451694
genomic: ACAACGCTGTTGCTCTTGAATAAATCTGATCTACTGCCCGTCGCAATAAGgtgtgcattc ... tttcttccagAAAAAAATGGGCAAGCTACTTTGACGAGCTGGGACTGGATTATATCTTCTG
EST: ACAACGCTGTTGCTCTTGAATAAATCTGATCTACTGCCCGTCGCAATAAG NNNNNNNTGGGCAAGCTACTTTGACGAGCTGGGATTGGATTATATCTTCTGEST: gi|169112817|gb|FE514569.1|FE514569
genomic: ACAACGCTGTTGCTCTTGAATAAATCTGATCTACTGCCCGTCGCAATAAGgtgtgcattc ... tttcttccagAAAAAAATGGGCAAGCTACTTTGACGAGCTGGGACTGGATTATATCTTCTG
EST: ACAACGCTGTTGCTCTTGAATAAATCTGATCTACTGCCCGTCGCAATAAG NNNNNNNTGGGCAAGCTACTTTGACGAGCTGGGACTGGATTATATCTTCTG
genomic: ACAACGCTGTTGCTCTTGAATAAATCTGATCTACTGCCCGTCGCAATAAGgtgtgcattc ... tttcttccagAAAAAAATGGGCAAGCTACTTTGACGAGCTGGGACTGGATTATATCTTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTACGTCAAGGAGATTGATGAAAACAAGACAACGCTGTTGCTCTTGAATAAATCTGATCTACTGCCCGTCGCAATAAGgtgtgcattcagttctgtttcaaaacaaactcttaggcttgcttattttcttccag
- - - - - - - - - - - - - - - - - GCTGTT