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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttggaatgcaagaaaaacttcgagtgcttctttgcaaggaaaacttatgttcgtgatttacagGCTTACGTCAAGGAGATTGATGAAAACAAGACAACGCTGTTGCTCTTGAATAAATCTGATCTACTGCCCGTCGCAATAAG

Basic information

species Selaginella moellendorffii
transcript EFJ12962
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169055512|gb|FE465884.1|FE465884
EST:     TGGTGGTGGATGCTAGAAACCCACTATTTTATCGTTGTCCAGACCTGGAG                         GCTTACGTCAAGGAGATTGATGAAAACAAGACAACGCTGTTGCTCTTGAAT
genomic: TGGTGGTGGATGCTAGAAACCCACTATTTTATCGTTGTCCAGACCTGGAGgtaacttgga ... tgatttacagGCTTACGTCAAGGAGATTGATGAAAACAAGACAACGCTGTTGCTCTTGAAT
EST: gi|169045721|gb|FE451694.1|FE451694
EST:     TGGTGGTGGATGCTACAAACCCACTATTTTATCGTTGTCCAGACCTGGAG                         GCTTACGTCAAGGAGATTGATGAAAACAAGACAACGCTGTTGCTCTTGAAT
genomic: TGGTGGTGGATGCTAGAAACCCACTATTTTATCGTTGTCCAGACCTGGAGgtaacttgga ... tgatttacagGCTTACGTCAAGGAGATTGATGAAAACAAGACAACGCTGTTGCTCTTGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagaaaaacttcgagtgcttctttgcaaggaaaacttatgttcgtgatttacagGCTTACGTCAAGGAGATTGATGAAAACAAGACAACGCTGTTGCTCTTGAATAAATCTGATCTACTGCCCGTCGCAATAAG
                               aaaacttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaacttggaatgcaagaaaaacttcgagtgcttctttgcaaggaaaacttatgttcgtgatttacagGCTTACGTCAAGGAGATTGATGAAAACAAGACAACGCTGTTGCTCTTGAATAAATCTGATCTACTGCCCGTCGCAATAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT