1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgtggattactgttgttgctggcaatgcgctgattattacgtttcagATACGCTTATCAGATAATGCGCGAAGCTTTGGATTTACTCTCTAGTCTTCCGTCTCTTGTGGAAGTAACAATCCCAGACAAATGCCATATAACTGTGTGT
species | Selaginella moellendorffii |
transcript | EFJ12272 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTGAAGCAGATGATGCAGGATTTCAAGGACGAGAAACGGTTGCACAAAAG ATACGCTTATCAGATAATGCGCGAAGCTTTGGATTTACTCTCTAGTCTTCCEST: gi|169065111|gb|FE474559.1|FE474559
genomic: GTGAAGCAGATGATGCAAGATTTCAAGGACGAGAAACGGTTGCACAAAAGgtgtggatta ... tacgtttcagATACGCTTATCAGATAATGCGCGAAGCTTTGGATTTACTCTCTAGTCTTCC
EST: GTGAAGCAGATGATGCAGGATTTCAAGGACGAGAAACGGTTGCACAAAAG ATACGCTTATCAGATAATGCGCGAAGCTTTGGATTTACTCTCTAGTCTTCC
genomic: GTGAAGCAGATGATGCAAGATTTCAAGGACGAGAAACGGTTGCACAAAAGgtgtggatta ... tacgtttcagATACGCTTATCAGATAATGCGCGAAGCTTTGGATTTACTCTCTAGTCTTCC
gtgtggattactgttgttgctggcaatgcgctgattattacgtttcagATACGCTTATCAGATAATGCGCGAAGCTTTGGATTTACTCTCTAGTCTTCCGTCTCTTGTGGAAGTAACAATCCCAGACAAATGCCATATAACTGTGTGT
cgctgat putative branch site (score: 2)
tgattatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtggattactgttgttgctggcaatgcgctgattattacgtttcagATACGCTTATCAGATAATGCGCGAAGCTTTGGATTTACTCTCTAGTCTTCCGTCTCTTGTGGAAGTAACAATCCCAGACAAATGCCATATAACTGTGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG