1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgtgaaaagtggtttccttcgctctctcttctttcgttttgatcgatcgttttctttggtgtagCCTCATCCAAGCGTGAAACCAATGGCTTACGCGCCCCAAGCCTATGCGAGCAGCTTTGGATTCTAGAGGCCGAGACGAGTGGATTCAAGATGATGAAGAA
species | Selaginella moellendorffii |
transcript | EFJ12272 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGTTCGTGGCACCACATATGAAGCCCGAGTTCACGACATTCAAAGACGTG CCTCATCCAAGCGTGAAACCAATGGCTTACGCGCCCCAAGCCTATGCGAGCEST: gi|169065110|gb|FE474558.1|FE474558
genomic: GGTTCGTGGCACCACATATGAAGCCCGAGTTCACGACATTCAAAGACGTGgtatgtgaaa ... tttggtgtagCCTCATCCAAGCGTGAAACCAATGGCTTACGCGCCCCAAGCCTATGCGAGC
EST: GGTTCGTGGCACCACATATGAAGCCCGAGTTCACGACATTCAAAGACGTG CCTCATCCAAGCGTGAAACCAATGGCTTACGCACCCCAAGCCTATGCGAGC
genomic: GGTTCGTGGCACCACATATGAAGCCCGAGTTCACGACATTCAAAGACGTGgtatgtgaaa ... tttggtgtagCCTCATCCAAGCGTGAAACCAATGGCTTACGCGCCCCAAGCCTATGCGAGC
tggtttccttcgctctctcttctttcgttttgatcgatcgttttctttggtgtagCCTCATCCAAGCGTGAAACCAATGGCTTACGCGCCCCAAGCCTATGCGAGCAGCTTTGGATTCTAGAGGCCGAGACGAGTGGATTCAAGATGATGAAGAA
ttttgat putative branch site (score: 17)
tcgttttcttt putative PPT
ttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgaaaagtggtttccttcgctctctcttctttcgttttgatcgatcgttttctttggtgtagCCTCATCCAAGCGTGAAACCAATGGCTTACGCGCCCCAAGCCTATGCGAGCAGCTTTGGATTCTAGAGGCCGAGACGAGTGGATTCAAGATGATGAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA