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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTTTGCACTAAAACCCGGCCTAATTGCAATGCCTGTCCCATGAGAATGGAGTGTAGGCACTTTGCAAGTGCATATGCAAGgtaagaagctttttttcctgttgctgtttgtgctaaccagaaaacaaaacgtcttctgctcag

Basic information

species Selaginella moellendorffii
transcript EFJ12206
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ12206 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: LOC_Os02g29230.1 (Oryza sativa), 5'ss of exon 11
GTGTTTTGCACTAAAACCCGGCCTAATTGCAATGCCTGTCCCATGAGAATGGAGTGTAGGCACTTTGCAAGTGCATATGCAAGgtaa--------gaagctttttttcctgtt-------gctgtt----tgtgctaaccagaaaaca--aaacgtcttctgctcag----------------
|| || ||  | |||| |  ||||||||||||| | ||||| ||||||   ||||||| ||| ||||| ||||||| ||||||||||         | ||||  | ||||  |       ||| ||    | | |||      ||||   || ||  ||      ||                
GTTTTCTGTTCAAAAAGCAAGCCTAATTGCAATTCATGTCCAATGAGAGCTGAGTGTAAGCATTTTGCTAGTGCATTTGCAAGgtaatactttgaaatgcttgatatcctaattaatatagctattgctatcttctagttgtcaaactttaatcgcatttctgcaagtgagtctcaattttct

upper sequence: EFJ12206 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: GRMZM2G422464_T02 (Zea mays), 5'ss of exon 9
GTGTTTTGCACTAAAACCCGGCCTAATTGCAATGCCTGTCCCATGAGAATGGAGTGTAGGCACTTTGCAAGTGCATATGCAAGgtaa------gaagctttttttcctgttgctgtttgtgctaaccagaaaac-aaaacgtcttctgctcag---------------------------------
|| || ||||| ||||    ||||||||||||| | ||||| ||||||   || |||| ||||||||| ||||||| ||||||||||      |||      | ||||  || | ||   |||||     |  |  ||   | ||||    ||                                 
GTTTTCTGCACAAAAAGTAAGCCTAATTGCAATTCATGTCCAATGAGAGCTGAATGTAAGCACTTTGCTAGTGCATTTGCAAGgtaattccaggaaatgcaatatcct--tgttattca-gctaatggacatgctgaattatgttctttagagtttagactttacatatatgtaaggggtactgtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169064931|gb|FE475627.1|FE475627
EST:     GCCTGTCCCATGAGAATGGAGTGTAGGCACTTTGCAAGTGCATATGCAAG                         TGCTAGGCTTGCTTTGCCAGCCCCTCCTACACAATGTGAACAACAAGGTGA
genomic: GCCTGTCCCATGAGAATGGAGTGTAGGCACTTTGCAAGTGCATATGCAAGgtaagaagct ... ttctgctcagTGCTAGGCTTGCTTTGCCAGCCCCTCCTACACAATGTGAACAACAAGGTGA
EST: gi|169076623|gb|FE484730.1|FE484730
EST:     GCCTGTCCCATGAGAATGGAGTGTAGGCACTTTGCAAGTGCATATGCAAG                         TGCTAGGCTTGCTTTGCCAGCCCCTCCTACACAATGTGAACAACAAGGTGA
genomic: GCCTGTCCCATGAGAATGGAGTGTAGGCACTTTGCAAGTGCATATGCAAGgtaagaagct ... ttctgctcagTGCTAGGCTTGCTTTGCCAGCCCCTCCTACACAATGTGAACAACAAGGTGA