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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagaagtccacacttagctgcacaatgtactggactaaatcgctgtctattcccagGTGTTTTGCACTAAAACCCGGCCTAATTGCAATGCCTGTCCCATGAGAATGGAGTGTAGGCACTTTGCAAGTGCATATGCAAG

Basic information

species Selaginella moellendorffii
transcript EFJ12206
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169064931|gb|FE475627.1|FE475627
EST:     ATACGAGCTACACTACCAGATGATTACGTTTGGGAAG                         GTGTTTTGCACTAAAACCCGGCCTAATTGCAATGCCTGTCCCATGAGAATG
genomic: ATACGAGCTACACTACCAGATGATTACGTTTGGGAAGgtaaagaagt ... ctattcccagGTGTTTTGCACTAAAACCCGGCCTAATTGCAATGCCTGTCCCATGAGAATG
EST: gi|169076623|gb|FE484730.1|FE484730
EST:     ATACGAGCTACACTACCAGATGATTACGTTTGGGAAG                         GTGTTTTGCACTAAAACCCGGCCTAATTGCAATGCCTGTCCCATGAGAATG
genomic: ATACGAGCTACACTACCAGATGATTACGTTTGGGAAGgtaaagaagt ... ctattcccagGTGTTTTGCACTAAAACCCGGCCTAATTGCAATGCCTGTCCCATGAGAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaagtccacacttagctgcacaatgtactggactaaatcgctgtctattcccagGTGTTTTGCACTAAAACCCGGCCTAATTGCAATGCCTGTCCCATGAGAATGGAGTGTAGGCACTTTGCAAGTGCATATGCAAG
                               gactaaa  putative branch site (score: 2)
                                            tctattccc  putative PPT
                                actaaat  TA-rich tract