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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggcctttatttttgtccaggaggataatttctaagtctgtttcacggcagGAACTGGAGCAAGCATCGGCAGCACAAAATCCTGTCTTGCTGTTCCTCCTCTGAGTGAGGGCGAAAGTTTCGCTAATGTATACAGTGTTATCTTGATTTT

Basic information

species Selaginella moellendorffii
transcript EFJ11322
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169112357|gb|FE510125.1|FE510125
EST:     GCGGATCAGGCAACACCAGTCACGG                         GAACTGGAGCAAGCATCGGCAGCACAAAATCCTGTCTTGCTGTTCCTCCTC
genomic: GCGGATCAGGCAACACCAGTCACGGgtaggccttt ... ttcacggcagGAACTGGAGCAAGCATCGGCAGCACAAAATCCTGTCTTGCTGTTCCTCCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaggcctttatttttgtccaggaggataatttctaagtctgtttcacggcagGAACTGGAGCAAGCATCGGCAGCACAAAATCCTGTCTTGCTGTTCCTCCTCTGAGTGAGGGCGAAAGTTTCGCTAATGTATACAGTGTTATCTTGATTTT
                                         tctgtttc  CT-rich tract
         tttatttttgt  TA-rich tract