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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggcttgttctatagcatgtctcaatcgtcccttaccttttatttcgtttcttaccaactttgcagATCAGGCAACACCAGTCACGG

Basic information

species Selaginella moellendorffii
transcript EFJ11322
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169112357|gb|FE510125.1|FE510125
EST:     GCGGTGTGAGCGGCAGATAAAATCGAATGAGACTAGGCTTCATGGTGCGG                         ATCAGGCAACACCAGTCACGG
genomic: GCGGTGTGAGCGGCAGATAAAATCGAATGAGACTAGGCTTCATGGTGCGGgtatggcttg ... aactttgcagATCAGGCAACACCAGTCACGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagcatgtctcaatcgtcccttaccttttatttcgtttcttaccaactttgcagATCAGGCAACACCAGTCACGG
                                     ttcttac  putative branch site (score: 2)
                          ttttattt  TA-rich tract