1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
TGATGCTGCCGTTACCGCTGTGAGTACATACGGCGGAGCTTCGGCAGGACACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAGgtttgcaaagttatgcgttttactggcagcttgagaaacaaactcgtttgcgcag
species | Selaginella moellendorffii |
transcript | EFJ11288 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAG AAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAGEST: gi|169069767|gb|FE477484.1|FE477484
genomic: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAGgtttgcaaag ... gtttgcgcagAAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAG
EST: ACAGAACAATGCTTGATGCATTGCTGCCTGCAGCAGCAGTTCTAAGAGAG AAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCGGCCGAGEST: gi|169096076|gb|FE497363.1|FE497363
genomic: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAGgtttgcaaag ... gtttgcgcagAAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAG
EST: ACAGAACAATGCTTGATGCATTGCTGCCTGCAGCAGCAGTTCTAAGAGAG AAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCGGCCGAGEST: gi|169093165|gb|FE494198.1|FE494198
genomic: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAGgtttgcaaag ... gtttgcgcagAAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAG
EST: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAG AAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAGEST: gi|169081724|gb|FE488182.1|FE488182
genomic: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAGgtttgcaaag ... gtttgcgcagAAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAG
EST: ACAGAACAATGCTTGATGCATTGCTGCCTGCAGCAGCAGTTCTAAGAGAG AAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCGGCCGAGEST: gi|169077287|gb|FE485589.1|FE485589
genomic: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAGgtttgcaaag ... gtttgcgcagAAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAG
EST: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAG AAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAGEST: gi|169052446|gb|FE462774.1|FE462774
genomic: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAGgtttgcaaag ... gtttgcgcagAAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAG
EST: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAG AAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAGEST: gi|169076148|gb|FE485178.1|FE485178
genomic: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAGgtttgcaaag ... gtttgcgcagAAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAG
EST: ACAGAACAATGCTTGATGCATTGCTGCCTGCAGCAGCAGTTCTAAGAGAG AAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCGGCCGAGEST: gi|169029149|gb|FE439381.1|FE439381
genomic: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAGgtttgcaaag ... gtttgcgcagAAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAG
EST: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAG AAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAGEST: gi|169096989|gb|FE500057.1|FE500057
genomic: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAGgtttgcaaag ... gtttgcgcagAAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAG
EST: ACAGAACAATGCTTGATGCATTGCTGCCTGCAGCAGCAGTTCTAAGAGAG AAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCGGCCGAGEST: gi|169044598|gb|FE450637.1|FE450637
genomic: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAGgtttgcaaag ... gtttgcgcagAAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAG
EST: ACAGAACAATGCTTGATGCATTGCTGCCTGCAGCAGCAGTTCTAAGAGAG AAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCGGCCGAGEST: gi|169040870|gb|FE447921.1|FE447921
genomic: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAGgtttgcaaag ... gtttgcgcagAAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAG
EST: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTTTAAGAGAG AAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAGEST: gi|169020101|gb|FE430880.1|FE430880
genomic: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAGgtttgcaaag ... gtttgcgcagAAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAG
EST: ACAGAACAATGCTTGATGCATTGCTGCCTGCAGCAGCAGTTCTAAGAGAG AAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCGGCCGAGEST: gi|169096955|gb|FE497592.1|FE497592
genomic: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAGgtttgcaaag ... gtttgcgcagAAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAG
EST: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAG AAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAGEST: gi|169096954|gb|FE497591.1|FE497591
genomic: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAGgtttgcaaag ... gtttgcgcagAAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAG
EST: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAG AAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAGEST: gi|169078532|gb|FE490669.1|FE490669
genomic: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAGgtttgcaaag ... gtttgcgcagAAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAG
EST: ACAGAACAATGCTTGATGCATTGCTGCCTGCAGCAGCAGTTCTAAGAGAG AAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCGGCCGAGEST: gi|169028495|gb|FE439104.1|FE439104
genomic: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAGgtttgcaaag ... gtttgcgcagAAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAG
EST: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAG AAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAGEST: gi|169066803|gb|FE473635.1|FE473635
genomic: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAGgtttgcaaag ... gtttgcgcagAAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAG
EST: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAG AAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAGEST: gi|169029649|gb|FE437320.1|FE437320
genomic: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAGgtttgcaaag ... gtttgcgcagAAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAG
EST: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAG AAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAGEST: gi|169033716|gb|FE441644.1|FE441644
genomic: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAGgtttgcaaag ... gtttgcgcagAAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAG
EST: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAG AAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAGEST: gi|169110787|gb|FE512637.1|FE512637
genomic: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAGgtttgcaaag ... gtttgcgcagAAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAG
EST: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAG AAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAG
genomic: ACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAGgtttgcaaag ... gtttgcgcagAAAGTGGATGCTGGAGAAGATCCCGTGAAAGCATTCGTGGCTGCAGCCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGCTGCCGTTACCGCTGTGAGTACATACGGCGGAGCTTCGGCAGGACACAGAACCATGCTTGATGCGTTGCTGCCTGCAGCAGCAGTTCTAAGAGAGgtttgcaaagttatgcgttttactggcagcttgagaaacaaactcgtttgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA