1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
GGAAGCTGCTATCGAGGCTGGTGCTGAGGCAATCATAAAAATAAAGGACTCTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACGgtaagcattgggattcatagctatctatcgtataaactttgttcgtgcttgtag
species | Selaginella moellendorffii |
transcript | EFJ11288 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACG ATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTGEST: gi|169069767|gb|FE477484.1|FE477484
genomic: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACGgtaagcattg ... gtgcttgtagATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTG
EST: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACG ATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTGEST: gi|169093165|gb|FE494198.1|FE494198
genomic: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACGgtaagcattg ... gtgcttgtagATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTG
EST: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACG ATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTGEST: gi|169081724|gb|FE488182.1|FE488182
genomic: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACGgtaagcattg ... gtgcttgtagATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTG
EST: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACG ATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTGEST: gi|169077287|gb|FE485589.1|FE485589
genomic: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACGgtaagcattg ... gtgcttgtagATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTG
EST: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACG ATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTGEST: gi|169052446|gb|FE462774.1|FE462774
genomic: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACGgtaagcattg ... gtgcttgtagATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTG
EST: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACG ATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTGEST: gi|169076148|gb|FE485178.1|FE485178
genomic: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACGgtaagcattg ... gtgcttgtagATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTG
EST: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACG ATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTGEST: gi|169029149|gb|FE439381.1|FE439381
genomic: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACGgtaagcattg ... gtgcttgtagATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTG
EST: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACG ATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTGEST: gi|169096989|gb|FE500057.1|FE500057
genomic: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACGgtaagcattg ... gtgcttgtagATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTG
EST: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACG ATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTGEST: gi|169020101|gb|FE430880.1|FE430880
genomic: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACGgtaagcattg ... gtgcttgtagATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTG
EST: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACG ATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTGEST: gi|169078532|gb|FE490669.1|FE490669
genomic: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACGgtaagcattg ... gtgcttgtagATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTG
EST: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACG ATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTGEST: gi|169028495|gb|FE439104.1|FE439104
genomic: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACGgtaagcattg ... gtgcttgtagATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTG
EST: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACG ATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTGEST: gi|169066803|gb|FE473635.1|FE473635
genomic: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACGgtaagcattg ... gtgcttgtagATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTG
EST: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACG ATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTGEST: gi|169033716|gb|FE441644.1|FE441644
genomic: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACGgtaagcattg ... gtgcttgtagATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTG
EST: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACG ATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTGEST: gi|169110787|gb|FE512637.1|FE512637
genomic: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACGgtaagcattg ... gtgcttgtagATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTG
EST: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACG ATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTG
genomic: CTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACGgtaagcattg ... gtgcttgtagATGTGGAAAGGAGCCAATGCCGTACTCGAAGATCTGCGGAAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGCTGCTATCGAGGCTGGTGCTGAGGCAATCATAAAAATAAAGGACTCTTTGAATGACTGGGACAGCAAAGTAGGGGATGGAGACTGTGGCACAACGgtaagcattgggattcatagctatctatcgtataaactttgttcgtgcttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA