1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGATCAATATAGAATGGGGTCATTTCTGGTCACCTCACATCCCAAAGACGGAGATTGACGATGATTTGGATGCTGAGAGTGTTCATCCTGGACAACAGgttgtgatagtttttgatgagcttttccagatttctgtttacacttacattctatgtaactgtag
species | Selaginella moellendorffii |
transcript | EFJ11217 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CGGAGATTGACGATGATTTGGATGCTGAGAGTGTTCATCCTGGACAACAG GTGTTTGAAAAGCTTTTCTCGGGAATGTGCCTTGGAGACATTGTCCGGAGGEST: gi|169101457|gb|FE501430.1|FE501430
genomic: CGGAGATTGACGATGATTTGGATGCTGAGAGTGTTCATCCTGGACAACAGgttgtgatag ... gtaactgtagGTGTTTGAAAAGCTTTTCTCGGGAATGTACCTTGGAGACATTGTCCGGAGG
EST: CGGAGATTGACGATGATTTGGATGCTGAGAGTGTTCATCCTGGACAACAG GTGTTTGAAAAGCTTTTCTCGGGAATGTACCTTGGAGACATTGTCCGGAGGEST: gi|169043012|gb|FE452366.1|FE452366
genomic: CGGAGATTGACGATGATTTGGATGCTGAGAGTGTTCATCCTGGACAACAGgttgtgatag ... gtaactgtagGTGTTTGAAAAGCTTTTCTCGGGAATGTACCTTGGAGACATTGTCCGGAGG
EST: CGGAGATTGACGATGATTTGGATGCTGAGAGTGTTCATCCTGGACAACAG GTGTTTGAAAAGCTTTTCTCGGGAATGTGCCTTGGAGACATTGTCCGGAGG
genomic: CGGAGATTGACGATGATTTGGATGCTGAGAGTGTTCATCCTGGACAACAGgttgtgatag ... gtaactgtagGTGTTTGAAAAGCTTTTCTCGGGAATGTACCTTGGAGACATTGTCCGGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGATCAATATAGAATGGGGTCATTTCTGGTCACCTCACATCCCAAAGACGGAGATTGACGATGATTTGGATGCTGAGAGTGTTCATCCTGGACAACAGgttgtgatagtttttgatgagcttttccagatttctgtttacacttacattctatgtaactgtag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG