1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagaacttgatttcatcttgttgattagaatgaacatgtttgcagGTGATCAATATAGAATGGGGTCATTTCTGGTCACCTCACATCCCAAAGACGGAGATTGACGATGATTTGGATGCTGAGAGTGTTCATCCTGGACAACAG
species | Selaginella moellendorffii |
transcript | EFJ11217 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCAGTGAAATCCCAAAGTGGCCACCATCGCTACCAAAACCTGAAGAAACA GTGATCAATATAGAATGGGGTCATTTCTGGTCACCTCACATCCCAAAGACGEST: gi|169101457|gb|FE501430.1|FE501430
genomic: CCAGTGAAATCCCAAAGTGGCCACCATCGCTACCAAAACCTGAAGAAACAgtaagaactt ... atgtttgcagGTGATCAATATAGAATGGGGTCATTTCTGGTCACCTCACATCCCAAAGACG
EST: ATCGCTACCAAAACCTGAAGAAACA GTGATCAATATAGAATGGGGTCATTTCTGGTCACCTCACATCCCAAAGACGEST: gi|169043012|gb|FE452366.1|FE452366
genomic: ATCGCTACCAAAACCTGAAGAAACAgtaagaactt ... atgtttgcagGTGATCAATATAGAATGGGGTCATTTCTGGTCACCTCACATCCCAAAGACG
EST: CCAGTGAAATCCCAAAGTGGCCACCATCGCTACCAAAACCTGAAGAAACA GTGATCAATATAGAATGGGGTCATTTCTGGTCACCTCACATCCCAAAGACG
genomic: CCAGTGAAATCCCAAAGTGGCCACCATCGCTACCAAAACCTGAAGAAACAgtaagaactt ... atgtttgcagGTGATCAATATAGAATGGGGTCATTTCTGGTCACCTCACATCCCAAAGACG
gtaagaacttgatttcatcttgttgattagaatgaacatgtttgcagGTGATCAATATAGAATGGGGTCATTTCTGGTCACCTCACATCCCAAAGACGGAGATTGACGATGATTTGGATGCTGAGAGTGTTCATCCTGGACAACAG
tgttgat putative branch site (score: 14)
attagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaacttgatttcatcttgttgattagaatgaacatgtttgcagGTGATCAATATAGAATGGGGTCATTTCTGGTCACCTCACATCCCAAAGACGGAGATTGACGATGATTTGGATGCTGAGAGTGTTCATCCTGGACAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG