Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCGAATAGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctctagaatccattccattcgtgaagagtttgatcgattcctggacag

Basic information

species Selaginella moellendorffii
transcript EFJ09199
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169050488|gb|FE458880.1|FE458880
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169067895|gb|FE474766.1|FE474766
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169100155|gb|FE502395.1|FE502395
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169103735|gb|FE506100.1|FE506100
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169113418|gb|FE514745.1|FE514745
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169105850|gb|FE503534.1|FE503534
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169053853|gb|FE460944.1|FE460944
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169037802|gb|FE442513.1|FE442513
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169071952|gb|FE478174.1|FE478174
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169056887|gb|FE466465.1|FE466465
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169067909|gb|FE474767.1|FE474767
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169024737|gb|FE433284.1|FE433284
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169046519|gb|FE457458.1|FE457458
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169074223|gb|FE481909.1|FE481909
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|70669288|gb|DN837865.1|DN837865
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169107215|gb|FE508240.1|FE508240
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169069724|gb|FE477051.1|FE477051
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169111345|gb|FE510894.1|FE510894
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGTTTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169058569|gb|FE464295.1|FE464295
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169046566|gb|FE457479.1|FE457479
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169111488|gb|FE510348.1|FE510348
EST:     GGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGG-AC                         GCTTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGG
genomic: -GGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGC-TTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGG
EST: gi|169109495|gb|FE509565.1|FE509565
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|70669503|gb|DN838080.1|DN838080
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169024738|gb|FE433285.1|FE433285
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169043835|gb|FE453501.1|FE453501
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169113419|gb|FE514746.1|FE514746
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169070018|gb|FE476487.1|FE476487
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|70670024|gb|DN838601.1|DN838601
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGAGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169045843|gb|FE453077.1|FE453077
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169023436|gb|FE430060.1|FE430060
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169055604|gb|FE464637.1|FE464637
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169058114|gb|FE466570.1|FE466570
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169069896|gb|FE480356.1|FE480356
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169068287|gb|FE478942.1|FE478942
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169042709|gb|FE451528.1|FE451528
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169071030|gb|FE477369.1|FE477369
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169075776|gb|FE481850.1|FE481850
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169071031|gb|FE477370.1|FE477370
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169069779|gb|FE477496.1|FE477496
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169068286|gb|FE478941.1|FE478941
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169107047|gb|FE505992.1|FE505992
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCANAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169036874|gb|FE446018.1|FE446018
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169111489|gb|FE510349.1|FE510349
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169023980|gb|FE436466.1|FE436466
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169111943|gb|FE512207.1|FE512207
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169113577|gb|FE514488.1|FE514488
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169069725|gb|FE477052.1|FE477052
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169099225|gb|FE502063.1|FE502063
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|70669552|gb|DN838129.1|DN838129
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169100979|gb|FE500606.1|FE500606
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169045015|gb|FE450898.1|FE450898
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|70669134|gb|DN837711.1|DN837711
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169069778|gb|FE477495.1|FE477495
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169104191|gb|FE507180.1|FE507180
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169106501|gb|FE503860.1|FE503860
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169051423|gb|FE457695.1|FE457695
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169054808|gb|FE460604.1|FE460604
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169047668|gb|FE454836.1|FE454836
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169036448|gb|FE443538.1|FE443538
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169105536|gb|FE504090.1|FE504090
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169054503|gb|FE462587.1|FE462587
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169068719|gb|FE479764.1|FE479764
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
EST: gi|169071815|gb|FE477595.1|FE477595
EST:     AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAAC                         GCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG
genomic: AGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 423

AAAGCGAATAGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctc ... tcctggacagGCTTCCCGGAGACTATGGCTTCGATCCCTTGGGCCTCTCCGACCCGGCGGGAGCTGGAAACTTCATGACTCCCAACTGGTTGTCCTACGCGGAGATCATC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAGCGAATAGGCAGCTGTGGTTCGCGTCGTCGCAAAGCTTGTCCTACCTAGATGGAACgtaagctctctagaatccattccattcgtgaagagtttgatcgattcctggacag

- - - - -  GCAGCT
- - - - - - CAGCTG
- - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA