1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacttgtttttctttttcagcgctttactctcttttgttctagGCTTATGCTGCTGCTCGTTTTGCGGAGTCTTGCCTTCGTGCAATAGACGGCGACGCTGATGTCTACGAGTGCACTTACGTCAAGTCGGAT
species | Selaginella moellendorffii |
transcript | EFJ07703 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCAAAGGCTGGAGCAGGCTCTGCGACTTTGTCGATG GCTTATGCTGCTGCTCGTTTTGCGGAGTCTTGCCTTCGTGCAATAGACGGCEST: gi|169026915|gb|FE434253.1|FE434253
genomic: GCAAAGGCTGGAGCAGGCTCTGCGACTTTGTCGATGgtacttgttt ... tttgttctagGCTTATGCTGCTGCTCGTTTTGCGGAGTCTTGCCTTCGTGCAATAGACGGC
EST: GCAAAGGCTGGAGCAGGCTTTGCGACTTTGTCGATG GGTTATGCTGCTGCTCGTTTTGCGGAGTCTTGCCTTCGTGCAATAGACGGCEST: gi|169100371|gb|FE501168.1|FE501168
genomic: GCAAAGGCTGGAGCAGGCTCTGCGACTTTGTCGATGgtacttgttt ... tttgttctagGCTTATGCTGCTGCTCGTTTTGCGGAGTCTTGCCTTCGTGCAATAGACGGC
EST: GCAAAGGCTGGAGCAGGCTCTGCGACTTTGTCGATG GCCTACGCTGCTGCTCGCTTTGCGGAGTCTTGCCTTCGTGCAATTGACGGC
genomic: GCAAAGGCTGGAGCAGGCTCTGCGACTTTGTCGATGgtacttgttt ... tttgttctagGCTTATGCTGCTGCTCGTTTTGCGGAGTCTTGCCTTCGTGCAATAGACGGC
gtacttgtttttctttttcagcgctttactctcttttgttctagGCTTATGCTGCTGCTCGTTTTGCGGAGTCTTGCCTTCGTGCAATAGACGGCGACGCTGATGTCTACGAGTGCACTTACGTCAAGTCGGAT
tttttctttttcagcg CT-rich tract
ttgtttttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttgtttttctttttcagcgctttactctcttttgttctagGCTTATGCTGCTGCTCGTTTTGCGGAGTCTTGCCTTCGTGCAATAGACGGCGACGCTGATGTCTACGAGTGCACTTACGTCAAGTCGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT