1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCCGCTGCTGTCCAAGACACGCCCCAAAACCGAGTTCACGCAAGAGGAGATCGAGAAGCTGACAGTGAGGATTCAAAACGCTGGCACAGAAGTAGTTGAGgtaactgagaatttcttcccgcacttggagagttgacgagtattttcgcgtttttcatttcgaacag
species | Selaginella moellendorffii |
transcript | EFJ07703 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCGAGAAGCTGACAGTGAGGATTCAAAACGCTGGCACAGAAGTAGTTGAG GCAAAGGCTGGAGCAGGCTCTGCGACTTTGTCGATGEST: gi|169026915|gb|FE434253.1|FE434253
genomic: TCGAGAAGCTGACAGTGAGGATTCAAAACGCTGGCACAGAAGTAGTTGAGgtaactgaga ... tttcgaacagGCAAAGGCTGGAGCAGGCTCTGCGACTTTGTCGATG
EST: TCGAGAAGCTGCCAGTGAGGATTCAAAACGCTGGCACAGAAGTAGTTGAG GCAAAGGCTGGAGCAGGCTTTGCGACTTTGTCGATGEST: gi|169100371|gb|FE501168.1|FE501168
genomic: TCGAGAAGCTGACAGTGAGGATTCAAAACGCTGGCACAGAAGTAGTTGAGgtaactgaga ... tttcgaacagGCAAAGGCTGGAGCAGGCTCTGCGACTTTGTCGATG
EST: TCGAGAAGCTGACAGTGAGGATTCAAAACGCTGGCACAGAAGTAGTCGAG GCAAAGGCTGGAGCAGGCTCTGCGACTTTGTCGATG
genomic: TCGAGAAGCTGACAGTGAGGATTCAAAACGCTGGCACAGAAGTAGTTGAGgtaactgaga ... tttcgaacagGCAAAGGCTGGAGCAGGCTCTGCGACTTTGTCGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCGCTGCTGTCCAAGACACGCCCCAAAACCGAGTTCACGCAAGAGGAGATCGAGAAGCTGACAGTGAGGATTCAAAACGCTGGCACAGAAGTAGTTGAGgtaactgagaatttcttcccgcacttggagagttgacgagtattttcgcgtttttcatttcgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT