1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaataatttctttgttctcttcaacttcggcagctataactcttggctttgcagGGACAATTTTTGAAATCAGCCGCTGAGTACAAGAAGAAGATCGACTTTGACG
species | Selaginella moellendorffii |
transcript | EFJ07670 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATATCAGTCTCTCTTGAACACAGACCTTGAGAGGGAGCTCAATCACCTG GGACAATTTTTGAAATCAGCCGCTGAGTACAAGAAGAAGATCGACTTTGACEST: gi|169047634|gb|FE454802.1|FE454802
genomic: GATATCAGTCTCTCTTGAACACAGACCTTGAGAGGGAGCTCAATCACCTGgtaataattt ... ggctttgcagGGACAATTTTTGAAATCAGCCGCTGAGTACAAGAAGAAGATCGACTTTGAC
EST: GATATCAGTCTCTCTTGAACACAGACCTTGAGAGGGAGCTCAATCACCTG GGACAATTTTTGAAATCAGCCGCTGAGTACAAGAEST: gi|169115653|gb|FE517863.1|FE517863
genomic: GATATCAGTCTCTCTTGAACACAGACCTTGAGAGGGAGCTCAATCACCTGgtaataattt ... ggctttgcagGGACAATTTTTGAAATCAGCCGCTGAGTACAAGA
EST: GATATCAGTCTCTCTTGAACACAGACCTTGAGAGGGAGCTCAATCACCTG GGACAATTTTTGAAATCAGCCGCTGAGTACAAGAAGAAGATCGACTTTGAC
genomic: GATATCAGTCTCTCTTGAACACAGACCTTGAGAGGGAGCTCAATCACCTGgtaataattt ... ggctttgcagGGACAATTTTTGAAATCAGCCGCTGAGTACAAGAAGAAGATCGACTTTGAC
gtaataatttctttgttctcttcaacttcggcagctataactcttggctttgcagGGACAATTTTTGAAATCAGCCGCTGAGTACAAGAAGAAGATCGACTTTGACG
ctataac putative branch site (score: 18)
aatttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataatttctttgttctcttcaacttcggcagctataactcttggctttgcagGGACAATTTTTGAAATCAGCCGCTGAGTACAAGAAGAAGATCGACTTTGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG