1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
CATACATTCCGAGGCGATGGAAGTGATCCTTTTGGATCTCCGACGAAGCAGTGGCCTTGGGATGATGGAACGGACTCGCTCGAGATGGCCTTCACAAGAAgtacgtgtgctttgcgttcggtttggtgtttatcttgttcttgtctccag
species | Selaginella moellendorffii |
transcript | EFJ07670 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTGGCCTTGGGATGATGGAACGGACTCGCTCGAGATGGCCTTCACAAGAA TGCGGGCAAACTTTGAGTTCCTGAAAAAGCTTGGCCTTAACCGATGGTGCTEST: gi|169115654|gb|FE517864.1|FE517864
genomic: GTGGCCTTGGGATGATGGAACGGACTCGCTCGAGATGGCCTTCACAAGAAgtacgtgtgc ... ttgtctccagTGCGGGCAAACTTTGAGTTCCTGAAAAAGCTTGGCCTTAACCGATGGTGCT
EST: GTGGCCTTGGGATGATGGAACGGACTCGCTCGAGATGGCCTTCACAAGAA TGCGGGCAAACTTTGAGTTCCTGAAAAAGCTTGGCCTTAACCGATGGTGCTEST: gi|169047634|gb|FE454802.1|FE454802
genomic: GTGGCCTTGGGATGATGGAACGGACTCGCTCGAGATGGCCTTCACAAGAAgtacgtgtgc ... ttgtctccagTGCGGGCAAACTTTGAGTTCCTGAAAAAGCTTGGCCTTAACCGATGGTGCT
EST: GTGGCCTTGGGATGATGGAACGGACTCGCTCGAGATGGCCTTCACAAGAA TGCGGGCAAACTTTGAGTTCCTGAAAAAGCTTGGCCTTAACCGATGGTGCTEST: gi|169053271|gb|FE462546.1|FE462546
genomic: GTGGCCTTGGGATGATGGAACGGACTCGCTCGAGATGGCCTTCACAAGAAgtacgtgtgc ... ttgtctccagTGCGGGCAAACTTTGAGTTCCTGAAAAAGCTTGGCCTTAACCGATGGTGCT
EST: GTGGCCTTGGGATGATGGAACGGACTCGCTCGAGATGGCCTTCACAAGAA TGCGGGCAAACTTTGAGTTCCTGAAAAAGCTTGGCCTTAACCGATGGTGCT
genomic: GTGGCCTTGGGATGATGGAACGGACTCGCTCGAGATGGCCTTCACAAGAAgtacgtgtgc ... ttgtctccagTGCGGGCAAACTTTGAGTTCCTGAAAAAGCTTGGCCTTAACCGATGGTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATACATTCCGAGGCGATGGAAGTGATCCTTTTGGATCTCCGACGAAGCAGTGGCCTTGGGATGATGGAACGGACTCGCTCGAGATGGCCTTCACAAGAAgtacgtgtgctttgcgttcggtttggtgtttatcttgttcttgtctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG