1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgaccatcagataaatgttttcgttgctctcattcatctctaatagtggtctgtttctttgtggcaagGTTGAAGCAGGGCTTTCAGCTCTGGGGGAGGCTCTGGAGGCTGGTTTTGAGGATTATAAG
species | Selaginella moellendorffii |
transcript | EFJ07567 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGCAATCGCCAGCTACAACGTAGCGTGCTGCTACGCAAAACTTGACCAG GTTGAAGCAGGGCTTTCAGCTCTGGGGGAGGCTCTGGAGGCTGGTTTTGAGEST: gi|169102464|gb|FE504413.1|FE504413
genomic: AAGCAATCGCCAGCTACAACGTAGCGTGCTGCTACGCAAAACTTGACCAGgtgaccatca ... ttgtggcaagGTTGAAGCAGGGCTTTCAGCTCTGGGGGAGGCTCTGGAGGCTGGTTTTGAG
EST: AAGCAATCGCCAGCTACAATGTAGCGTGCTGCTATGCAAAACTTGACCAG GTTGAAGCAGGACTTTCAGCTCTGGGGGAGGCTCTGGAGGCTGEST: gi|169070404|gb|FE476769.1|FE476769
genomic: AAGCAATCGCCAGCTACAACGTAGCGTGCTGCTACGCAAAACTTGACCAGgtgaccatca ... ttgtggcaagGTTGAAGCAGGGCTTTCAGCTCTGGGGGAGGCTCTGGAGGCTG
EST: AAGCAATCGCCAGCTACAACGTAGCGTGCTGCTACGCAAAACTTGACCAG GTTGAAGCAGGGCTTTCAGCTCTGGGGGAGGCTCTGGAGGCTGGTTTTGAGEST: gi|169102463|gb|FE504412.1|FE504412
genomic: AAGCAATCGCCAGCTACAACGTAGCGTGCTGCTACGCAAAACTTGACCAGgtgaccatca ... ttgtggcaagGTTGAAGCAGGGCTTTCAGCTCTGGGGGAGGCTCTGGAGGCTGGTTTTGAG
EST: AAGCAATCGCCAGCTACAATGTAGCGTGCTGCTATGCAAAACTTGACCAG GTTGAAGCAGGACTTTCAGCTCTGGGGGAGGCTCTGGAGGCTGGTTTTGAG
genomic: AAGCAATCGCCAGCTACAACGTAGCGTGCTGCTACGCAAAACTTGACCAGgtgaccatca ... ttgtggcaagGTTGAAGCAGGGCTTTCAGCTCTGGGGGAGGCTCTGGAGGCTGGTTTTGAG
aatgttttcgttgctctcattcatctctaatagtggtctgtttctttgtggcaagGTTGAAGCAGGGCTTTCAGCTCTGGGGGAGGCTCTGGAGGCTGGTTTTGAGGATTATAAG
ctctaat putative branch site (score: 51)
tctgtttcttt putative PPT
tctaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaccatcagataaatgttttcgttgctctcattcatctctaatagtggtctgtttctttgtggcaagGTTGAAGCAGGGCTTTCAGCTCTGGGGGAGGCTCTGGAGGCTGGTTTTGAGGATTATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT