1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtcggtcatgacttgttttttctcatctgtatcttaccgagattttttcatctcgaaagGAGAAAGAGAAGATCAGGCTGTATCGTCTGAGAAACTCGCAGCGCAAAGAAACGCGAATGTCATCAGTGAGCAGCTTCGTGAAATCCAG
species | Selaginella moellendorffii |
transcript | EFJ07567 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTTCGTCAAAGAATTGGACCTCTTCTCATGAAGATGCNNNNNNNNTACG GAGAAAGAGAAGATCAGGCTGTATCGTCTGAGAAACTCGCAGCGCAAAGAAEST: gi|169102464|gb|FE504413.1|FE504413
genomic: TGTTCGTCAAAGAATTGGACCTCTTCTCATGAAGATGCAAAAAAAATACGgtcggtcatg ... atctcgaaagGAGAAAGAGAAGATCAGGCTGTATCGTCTGAGAAACTCGCAGCGCAAAGAA
EST: TGTTCGTCAAAGAATTGGACCTCTTCTCATGAAGATGCAAAAAA--TACG GAGAAAGAGAAGATCAGGCTGTATCGTCTGAGAAACTCGCAGCGCAAAGAAEST: gi|169070404|gb|FE476769.1|FE476769
genomic: TGTTCGTCAAAGAATTGGACCTCTTCTCATGAAGATGCAAAAAAAATACGgtcggtcatg ... atctcgaaagGAGAAAGAGAAGATCAGGCTGTATCGTCTGAGAAACTCGCAGCGCAAAGAA
EST: TGTTCGTCAAAGAATTGGACCTCTTCTCATGAAGATGCNNNNNNNNTACG GAGAAAGAGAAGATCAGGCTGTATCGTCTGAGAAACTCGCAGCGCAAAGAA
genomic: TGTTCGTCAAAGAATTGGACCTCTTCTCATGAAGATGCAAAAAAAATACGgtcggtcatg ... atctcgaaagGAGAAAGAGAAGATCAGGCTGTATCGTCTGAGAAACTCGCAGCGCAAAGAA
gtcatgacttgttttttctcatctgtatcttaccgagattttttcatctcgaaagGAGAAAGAGAAGATCAGGCTGTATCGTCTGAGAAACTCGCAGCGCAAAGAAACGCGAATGTCATCAGTGAGCAGCTTCGTGAAATCCAG
atcttac putative branch site (score: 103)
ttttttcatctc putative PPT
attttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcggtcatgacttgttttttctcatctgtatcttaccgagattttttcatctcgaaagGAGAAAGAGAAGATCAGGCTGTATCGTCTGAGAAACTCGCAGCGCAAAGAAACGCGAATGTCATCAGTGAGCAGCTTCGTGAAATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT