1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAGgttagttcatatccttgattttctgtggacctatcctgtttgaggcttttctatctgtaatattattttagttgttacattgtaaccttgaccttccgagcagaaaaattgtgttttgatggatttattctttgttgttgtgatttttttctctaagttgatgtgctcatttactggtggcag
species | Physcomitrella patens |
transcript | PP1S9_474V6.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAG GATCCTGACACTAGGAAACCGCGAATTAAACTTTATGTTGATAAAGCTACAEST: gi|162161032|gb|FC337030.1|FC337030
genomic: GTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAGgttagttcat ... ctggtggcagGATCCTGACACTAGGAAACCGCGAATTAAACTTTATGTTGATAAAGCTACA
EST: GTCGTTGAAGTTTTCTCCAA-TGTGGCGTTATCAAGGAG GATCCTGACACTAGGAAAACGCGGAAT-AAACTTTATGTTGATAAAGCTAEST: gi|162180274|gb|FC355279.1|FC355279
genomic: GTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAGgttagttcat ... ctggtggcagGATCCTGACACTAGGAAACCGCG-AATTAAACTTTATGTTGATAAAGCTA
EST: GTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAG GATCCTGACACTAGGEST: gi|100447623|gb|CJ971922.1|CJ971922
genomic: GTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAGgttagttcat ... ctggtggcagGATCCTGACACTAGG
EST: GTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAG GATCCTGACACTAGGAAACCGCGAATTAAACTTTATGTTGATAAAGCTACAEST: gi|208375850|gb|DC926942.1|DC926942
genomic: GTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAGgttagttcat ... ctggtggcagGATCCTGACACTAGGAAACCGCGAATTAAACTTTATGTTGATAAAGCTACA
EST: GTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAG GATCCTGACACTAGGAAACCGCGAATTAAACTTTATGTTGATAAAGCTACA
genomic: GTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAGgttagttcat ... ctggtggcagGATCCTGACACTAGGAAACCGCGAATTAAACTTTATGTTGATAAAGCTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAGgttagttcatatccttgattttctgtggacctatcctgtttgaggcttttctatctgtaatattattttagttgttacattgtaaccttgaccttccgagcagaaaaattgtgttttgatggatttattctttgttgttgtgatttttttctctaagttgatgtgctcatttactggtggcag
- - TTGAAG
- - - - - - - - - - - - - - - - AAGGAG