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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttcatatccttgattttctgtggacctatcctgtttgaggcttttctatctgtaatattattttagttgttacattgtaaccttgaccttccgagcagaaaaattgtgttttgatggatttattctttgttgttgtgatttttttctctaagttgatgtgctcatttactggtggcagGATCCTGACACTAGGAAACCGCGAATTAAACTTTATGTTGATAAAGCTACAGGAAAACAGAAAGGTGACGGCCTAGTCACATATCTCAAG

Basic information

species Physcomitrella patens
transcript PP1S9_474V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208396113|gb|DC924579.1|DC924579
EST:     GTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAG                         GATCCTGACACTAGGAAACCGCGAATTAAACTTTATGTTGATAAAGCTACA
genomic: GTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAGgttagttcat ... ctggtggcagGATCCTGACACTAGGAAACCGCGAATTAAACTTTATGTTGATAAAGCTACA
EST: gi|100447623|gb|CJ971922.1|CJ971922
EST:     GTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAG                         GATCCTGACACTAGGAAACCGCGAATTAAACTTTATGTTGATAAAGCTACA
genomic: GTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAGgttagttcat ... ctggtggcagGATCCTGACACTAGGAAACCGCGAATTAAACTTTATGTTGATAAAGCTACA
EST: gi|208375850|gb|DC926942.1|DC926942
EST:     GTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAG                         GATCCTGACACTAGGAAACCGCGAATTAAACTTTATGTTGATAAAGCTACA
genomic: GTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAGgttagttcat ... ctggtggcagGATCCTGACACTAGGAAACCGCGAATTAAACTTTATGTTGATAAAGCTACA
EST: gi|162161032|gb|FC337030.1|FC337030
EST:     GTCGTTGAAGTTTTCTCCAA-TGTGGCGTTATCAAGGAG                         GATCCTGACACTAGGAAAACGCGGAAT-AAACTTTATGTTGATAAAGCTA
genomic: GTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAGgttagttcat ... ctggtggcagGATCCTGACACTAGGAAACCGCG-AATTAAACTTTATGTTGATAAAGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttgttgttgtgatttttttctctaagttgatgtgctcatttactggtggcagGATCCTGACACTAGGAAACCGCGAATTAAACTTTATGTTGATAAAGCTACAGGAAAACAGAAAGGTGACGGCCTAGTCACATATCTCAAG
                           agttgat  putative branch site (score: 5)
              atttttttctctaa  TA-rich tract