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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATCAGTAGACTTAGCACTGAGTATTCTTGATGGAACATCTTTGAGACCTGGGGTTGGCCCAATCATGTCTGTGACTCGAGCGAAGTTTGAGCAAAAGGgtacgttgttttgtgtttttcatagtcccgaagtttgtccaactcttgttcatagtcgtttctgcacttcctatagtagtcataattttgaaatcggtaa...

Basic information

species Physcomitrella patens
transcript PP1S9_474V6.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100447623|gb|CJ971922.1|CJ971922
EST:     TGGGGTTGGCCCAATCATGTCTGTGACTCGAGCGAAGTTTGAGCAAAAGG                         GGGAAGTATTCATGAAGAAGCAGCAAA
genomic: TGGGGTTGGCCCAATCATGTCTGTGACTCGAGCGAAGTTTGAGCAAAAGGgtacgttgtt ... ttttgtgcagGGGAAGTATTCATGAAGAAGCAGCAAA
EST: gi|208375850|gb|DC926942.1|DC926942
EST:     TGGGGTTGGCCCAATCATGTCTGTGACTCGAGCGAAGTTTGAGCAAAAGG                         GGGAAGTATTCATGAAGAAGCAGCAAAATAAACAAAGGAAAAAGAAGCTGA
genomic: TGGGGTTGGCCCAATCATGTCTGTGACTCGAGCGAAGTTTGAGCAAAAGGgtacgttgtt ... ttttgtgcagGGGAAGTATTCATGAAGAAGCAGCAAAATAAACAAAAGAAAAAGAAGCTGA