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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAAGGACGATAGATCTGGGGGTTCTCCAAAACAGCAGCAAACTgtaggtgtttattctcccatttaagctgctgtgtcgttagtcttcggatagtacattttttgagagcattgattgcagattgctgcatgacgtttttgtg...

Basic information

species Physcomitrella patens
transcript PP1S9_433V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18326228|gb|BJ158227.1|BJ158227
EST:     CTCAAGGACGATAGATCTGGGGGTTCTCCAAAACAGCAGCAAACT                         GCCGAAGAAGGAAAGACTTCTCCAGAGCCTGTGGTACCATCTATAGAGAAT
genomic: CTCAAGGACGATAGATCTGGGGGTTCTCCAAAACAGCAGCAAACTgtaggtgttt ... tactttccagGCCGAAGAAGGAAAGACTTCTCCAGAGCCTGTGGTACCATCTATAGAGAAT
EST: gi|100418158|gb|BY993362.1|BY993362
EST:     CTCAAGGACGATAGATCTGGGGGTTCTCCAAAACAGCAGCAAACT                         GCCGAAGAAGGAAAGACTTCTCCAGAGCCTGTGGTACCATCTATAGAGAAT
genomic: CTCAAGGACGATAGATCTGGGGGTTCTCCAAAACAGCAGCAAACTgtaggtgttt ... tactttccagGCCGAAGAAGGAAAGACTTCTCCAGAGCCTGTGGTACCATCTATAGAGAAT
EST: gi|100452317|gb|CJ975210.1|CJ975210
EST:     CTCAAGGACGATAGATCTGGGGGTTCTCCAAAACAGCAGCAAACT                         GCCGAAGAAGGAAAGGCTTCTCCAGAGCCTGTGGTACCATCTATAGAGAAT
genomic: CTCAAGGACGATAGATCTGGGGGTTCTCCAAAACAGCAGCAAACTgtaggtgttt ... tactttccagGCCGAAGAAGGAAAGACTTCTCCAGAGCCTGTGGTACCATCTATAGAGAAT
EST: gi|67577869|gb|BJ950036.1|BJ950036
EST:     CTCAAGGACGATAGATCTGGGGGTTCTCCAAAACAGCAGCAAACT                         GCCGAAGAAGGAAAGACTTCTCCAGAGCCTGTGGTACCATCTATAGAGAAT
genomic: CTCAAGGACGATAGATCTGGGGGTTCTCCAAAACAGCAGCAAACTgtaggtgttt ... tactttccagGCCGAAGAAGGAAAGACTTCTCCAGAGCCTGTGGTACCATCTATAGAGAAT