1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gaaatcagggaagaagacatggcccgagttccatgatggctttattactttttatttgctcgctgaattttgtttgaaacaacgtcgatgtactttccagGCCGAAGAAGGAAAGACTTCTCCAGAGCCTGTGGTACCATCTATAGAGAATGGAAAATCTGTTGCAGAGCATCAACCTACCAGTGCTGAGATGAATGGCA
species | Physcomitrella patens |
transcript | PP1S9_433V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCAAGGACGATAGATCTGGGGGTTCTCCAAAACAGCAGCAAACT GCCGAAGAAGGAAAGACTTCTCCAGAGCCTGTGGTACCATCTATAGAGAATEST: gi|100418158|gb|BY993362.1|BY993362
genomic: CTCAAGGACGATAGATCTGGGGGTTCTCCAAAACAGCAGCAAACTgtaggtgttt ... tactttccagGCCGAAGAAGGAAAGACTTCTCCAGAGCCTGTGGTACCATCTATAGAGAAT
EST: CTCAAGGACGATAGATCTGGGGGTTCTCCAAAACAGCAGCAAACT GCCGAAGAAGGAAAGACTTCTCCAGAGCCTGTGGTACCATCTATAGAGAATEST: gi|100452317|gb|CJ975210.1|CJ975210
genomic: CTCAAGGACGATAGATCTGGGGGTTCTCCAAAACAGCAGCAAACTgtaggtgttt ... tactttccagGCCGAAGAAGGAAAGACTTCTCCAGAGCCTGTGGTACCATCTATAGAGAAT
EST: CTCAAGGACGATAGATCTGGGGGTTCTCCAAAACAGCAGCAAACT GCCGAAGAAGGAAAGGCTTCTCCAGAGCCTGTGGTACCATCTATAGAGAATEST: gi|67577869|gb|BJ950036.1|BJ950036
genomic: CTCAAGGACGATAGATCTGGGGGTTCTCCAAAACAGCAGCAAACTgtaggtgttt ... tactttccagGCCGAAGAAGGAAAGACTTCTCCAGAGCCTGTGGTACCATCTATAGAGAAT
EST: CTCAAGGACGATAGATCTGGGGGTTCTCCAAAACAGCAGCAAACT GCCGAAGAAGGAAAGACTTCTCCAGAGCCTGTGGTACCATCTATAGAGAAT
genomic: CTCAAGGACGATAGATCTGGGGGTTCTCCAAAACAGCAGCAAACTgtaggtgttt ... tactttccagGCCGAAGAAGGAAAGACTTCTCCAGAGCCTGTGGTACCATCTATAGAGAAT
tactttttatttgctcgctgaattttgtttgaaacaacgtcgatgtactttccagGCCGAAGAAGGAAAGACTTCTCCAGAGCCTGTGGTACCATCTATAGAGAATGGAAAATCTGTTGCAGAGCATCAACCTACCAGTGCTGAGATGAATGGCA
tactttcc CT-rich tract
aattttgtttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaatcagggaagaagacatggcccgagttccatgatggctttattactttttatttgctcgctgaattttgtttgaaacaacgtcgatgtactttccagGCCGAAGAAGGAAAGACTTCTCCAGAGCCTGTGGTACCATCTATAGAGAATGGAAAATCTGTTGCAGAGCATCAACCTACCAGTGCTGAGATGAATGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG