Sequence
atgc intronic sequence ATGC exonic sequenceCACATGCAACTGAAATCAAAAGTTCTGTATCATCATCCTCTGTAGGTGAAGTCCAACCAGACGTGTAGTAATCAGCTGAAGCAGAGAAGAAGATTTAAAGgtaagatagtggtaagagttggtgtgttgtgtttttttttaattgtcaagttcataatgttggcgctaaagtagaagggtcttttccagcctttgtagtt...
Basic information
species | Physcomitrella patens |
transcript | PP1S9_415V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7583991|gb|AW699891.1|AW699891EST: GTCCAACCAGACGTGTAGTAATCAGCTGAAGCAGAGAAGAAGATTTAAAG GGTGTTCGAAGGTCAGACGACAATGAACTTGAGATGCCTGTTATTTGAGGG
genomic: GTCCAACCAGACGTGTAGTAATCAGCTGAAGCAGAGAAGAAGATTTAAAGgtaagatagt ... aaaaatttagGGTGTTCGAAGGTCAGACGACAATGAACTTGAGATGCCTGTTATTTGAGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACATGCAACTGAAATCAAAAGTTCTGTATCATCATCCTCTGTAGGTGAAGTCCAACCAGACGTGTAGTAATCAGCTGAAGCAGAGAAGAAGATTTAAAGgtaagatagtggtaagagttggtgtgttgtgtttttttttaattgtcaagttcataatgttggcgctaaagtagaagggtcttttccagcctttgtagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG