Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttttcttaatgtaggcgactcagttcctggcattgtgcagtgtaacatgtgtcatctgtttgataaccctttaattggtttttatgtaaaaaatttagGGTGTTCGAAGGTCAGACGACAATGAACTTGAGATGCCTGTTATTTGAGGGTATAAAACTGGAGTATAATGTGGACGTATGGTCTGTCGTGACAGTTGGT

Basic information

species Physcomitrella patens
transcript PP1S9_415V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7583991|gb|AW699891.1|AW699891
EST:     GTCCAACCAGACGTGTAGTAATCAGCTGAAGCAGAGAAGAAGATTTAAAG                         GGTGTTCGAAGGTCAGACGACAATGAACTTGAGATGCCTGTTATTTGAGGG
genomic: GTCCAACCAGACGTGTAGTAATCAGCTGAAGCAGAGAAGAAGATTTAAAGgtaagatagt ... aaaaatttagGGTGTTCGAAGGTCAGACGACAATGAACTTGAGATGCCTGTTATTTGAGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacatgtgtcatctgtttgataaccctttaattggtttttatgtaaaaaatttagGGTGTTCGAAGGTCAGACGACAATGAACTTGAGATGCCTGTTATTTGAGGGTATAAAACTGGAGTATAATGTGGACGTATGGTCTGTCGTGACAGTTGGT
                          tttaattggtttttat  TA-rich tract